| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1971* | 2020 |
| Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia V Quesada, L Conde, N Villamor, GR Ordóñez, P Jares, L Bassaganyas, ... Nature genetics 44 (1), 47-52, 2012 | 1278 | 2012 |
| GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information R Nogales-Cadenas, P Carmona-Saez, M Vazquez, C Vicente, X Yang, ... Nucleic acids research 37 (suppl_2), W317-W322, 2009 | 501 | 2009 |
| Pathway and network analysis of cancer genomes Nature methods 12 (7), 615-621, 2015 | 383 | 2015 |
| The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7, 1-17, 2015 | 372 | 2015 |
| Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy C Balbás-Martínez, A Sagrera, E Carrillo-de-Santa-Pau, J Earl, ... Nature genetics 45 (12), 1464-1469, 2013 | 329 | 2013 |
| CHEMDNER: The drugs and chemical names extraction challenge M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia Journal of cheminformatics 7, 1-11, 2015 | 267 | 2015 |
| The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12, 1-31, 2011 | 196 | 2011 |
| Computational approaches to identify functional genetic variants in cancer genomes Nature methods 10 (8), 723-729, 2013 | 189 | 2013 |
| Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts M Frenkel-Morgenstern, V Lacroix, I Ezkurdia, Y Levin, A Gabashvili, ... Genome research 22 (7), 1231-1242, 2012 | 174 | 2012 |
| Neoantigen prediction and computational perspectives towards clinical benefit: recommendations from the ESMO Precision Medicine Working Group L De Mattos-Arruda, M Vazquez, F Finotello, R Lepore, E Porta, J Hundal, ... Annals of oncology 31 (8), 978-990, 2020 | 113 | 2020 |
| Pathway and network analysis of more than 2500 whole cancer genomes MA Reyna, D Haan, M Paczkowska, LPC Verbeke, M Vazquez, ... Nature communications 11 (1), 729, 2020 | 109 | 2020 |
| Text mining for drugs and chemical compounds: methods, tools and applications M Vazquez, M Krallinger, F Leitner, A Valencia Molecular Informatics 30 (6‐7), 506-519, 2011 | 108 | 2011 |
| Quantification of miRNA-mRNA interactions A Muniategui, R Nogales-Cadenas, M Vázquez, X L. Aranguren, X Agirre, ... PloS one 7 (2), e30766, 2012 | 103 | 2012 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 90 | 2021 |
| Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities S Müller-Dott, E Tsirvouli, M Vazquez, RO Ramirez Flores, ... Nucleic acids research 51 (20), 10934-10949, 2023 | 80 | 2023 |
| Overview of the chemical compound and drug name recognition (CHEMDNER) task M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia BioCreative challenge evaluation workshop 2, 2, 2013 | 77 | 2013 |
| Overview of the CHEMDNER patents task M Krallinger, O Rabal, A Lourenço, MP Perez, GP Rodriguez, M Vazquez, ... Proceedings of the fifth BioCreative challenge evaluation workshop, 63-75, 2015 | 67 | 2015 |
| MyMiner: a web application for computer-assisted biocuration and text annotation D Salgado, M Krallinger, M Depaule, E Drula, AV Tendulkar, F Leitner, ... Bioinformatics 28 (17), 2285-2287, 2012 | 62 | 2012 |
| bioNMF: a web-based tool for nonnegative matrix factorization in biology E Mejía-Roa, P Carmona-Saez, R Nogales, C Vicente, M Vázquez, ... Nucleic acids research 36 (suppl_2), W523-W528, 2008 | 49 | 2008 |
Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
