| Opportunities and obstacles for deep learning in biology and medicine T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ... Journal of the royal society interface 15 (141), 20170387, 2018 | 1920 | 2018 |
| Emerging priorities for microbiome research CM Cullen, KK Aneja, S Beyhan, CE Cho, S Woloszynek, M Convertino, ... Frontiers in microbiology 11, 491374, 2020 | 160 | 2020 |
| Long-term urban market dynamics reveal increased bushmeat carcass volume despite economic growth and proactive environmental legislation on Bioko Island, Equatorial Guinea DT Cronin, S Woloszynek, WA Morra, S Honarvar, JM Linder, MK Gonder, ... PloS one 10 (7), e0134464, 2015 | 55 | 2015 |
| Metagenomic characterization of ambulances across the USA NB O’Hara, HJ Reed, E Afshinnekoo, D Harvin, N Caplan, G Rosen, ... Microbiome 5, 1-20, 2017 | 37 | 2017 |
| 16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses S Woloszynek, Z Zhao, J Chen, GL Rosen PLoS computational biology 15 (2), e1006721, 2019 | 36 | 2019 |
| Does getting defensive get you anywhere?—Seasonal balancing selection, temperature, and parasitoids shape real‐world, protective endosymbiont dynamics in the pea aphid AH Smith, MP O’Connor, B Deal, C Kotzer, A Lee, B Wagner, J Joffe, ... Molecular Ecology 30 (10), 2449-2472, 2021 | 31 | 2021 |
| Artificial intelligence based on machine learning in pharmacovigilance: a scoping review B Kompa, JB Hakim, A Palepu, KG Kompa, M Smith, PA Bain, ... Drug Safety 45 (5), 477-491, 2022 | 20 | 2022 |
| Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network Z Zhao, S Woloszynek, F Agbavor, JC Mell, BA Sokhansanj, GL Rosen PLoS computational biology 17 (9), e1009345, 2021 | 20 | 2021 |
| Exploring thematic structure and predicted functionality of 16S rRNA amplicon data S Woloszynek, JC Mell, Z Zhao, G Simpson, MP O’Connor, GL Rosen PLoS One 14 (12), e0219235, 2019 | 20 | 2019 |
| Engineering human microbiota: influencing cellular and community dynamics for therapeutic applications S Woloszynek, S Pastor, JC Mell, N Nandi, B Sokhansanj, GL Rosen International review of cell and molecular biology 324, 67-124, 2016 | 17 | 2016 |
| Renin–angiotensin–aldosterone system inhibitors in pediatric focal segmental glomerulosclerosis S Kangovi, M Edwards, S Woloszynek, N Mitra, H Feldman, BS Kaplan, ... Pediatric Nephrology 27, 813-819, 2012 | 15 | 2012 |
| Opportunities and obstacles for deep learning in biology and medicine. JR Soc Interface. 2018; 15 (141) T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ... Epub 2018/04/06. https://doi. org/10.1098/rsif. 2017.0387 PMID: 29618526, 2017 | 14 | 2017 |
| Exploring thematic structure in 16S rRNA marker gene surveys S Woloszynek, JC Mell, G Simpson, GL Rosen BioRxiv, 146126, 2017 | 13 | 2017 |
| Opportunities and obstacles for deep learning in biology and medicine. JR Soc Interface. 2018; 15 (141): 20170387 T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ... | 11 | 2017 |
| Correction to: Artificial Intelligence Based on Machine Learning in Pharmacovigilance: A Scoping Review B Kompa, JB Hakim, A Palepu, KG Kompa, M Smith, PA Bain, ... Drug Safety 46 (4), 433-433, 2023 | 5 | 2023 |
| Analysis methods for shotgun metagenomics S Woloszynek, Z Zhao, G Ditzler, JR Price, ER Reichenberger, Y Lan, ... Theoretical and Applied Aspects of Systems Biology, 71-112, 2018 | 5 | 2018 |
| Themetagenomics: exploring thematic structure and predicted functionality of 16s rRNA amplicon data S Woloszynek, JC Mell, Z Zhao, G Simpson, MP O’Connor, GL Rosen bioRxiv, 678110, 2019 | 2 | 2019 |
| theseus-An R package for the analysis and visualization of microbial community data JR Price, S Woloszynek, G Rosen, CM Sales bioRxiv, 295675, 2018 | 2 | 2018 |
| Evaluating a topic model approach for parsing microbiome data structure S Woloszynek, Z Zhao, G Simpson, MP O’Connor, JC Mell, GL Rosen bioRxiv, 176412, 2017 | 2 | 2017 |
| Does getting defensive get you anywhere?---Seasonally varying selection in pea aphids shapes a dynamic infection polymorphism with a protective bacterial endosymbiont D Smith, M O'Connor, B Deal, C Kotzer, A Lee, B Wagner, J Joffe, ... Authorea Preprints, 2020 | 1 | 2020 |
Gail RosenProfessor of ECE, Drexel UniversityVerified email at ece.drexel.edu
