| Spatial multi-omic map of human myocardial infarction C Kuppe, ROR Flores, Z Li, M Hannani, J Tanevski, M Halder, M Cheng, ... Nature 608, 766–777, 2022 | 216 | 2022 |
| Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data D Dimitrov, D Türei, M Garrido-Rodriguez, PL Burmedi, JS Nagai, C Boys, ... Nature communications 13 (1), 3224, 2022 | 193* | 2022 |
| SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids J Jansen, KC Reimer, JS Nagai, FS Varghese, GJ Overheul, M de Beer, ... Cell Stem Cell 29 (2), 217-231. e8, 2022 | 171 | 2022 |
| Heterogeneous bone-marrow stromal progenitors drive myelofibrosis via a druggable alarmin axis NB Leimkühler, HFE Gleitz, L Ronghui, IAM Snoeren, SNR Fuchs, ... Cell Stem Cell 28 (4), 637-652. e8, 2021 | 100 | 2021 |
| Platelet-instructed SPP1+ macrophages drive myofibroblast activation in fibrosis in a CXCL4-dependent manner K Hoeft, GJL Schaefer, H Kim, D Schumacher, T Bleckwehl, Q Long, ... Cell Reports 42 (2), 2023 | 40 | 2023 |
| Mapping the cardiac vascular niche in heart failure F Peisker, M Halder, J Nagai, S Ziegler, N Kaesler, K Hoeft, R Li, ... Nature Communications 13 (1), 3027, 2022 | 35 | 2022 |
| A stomata classification and detection system in microscope images of maize cultivars AH Aono, JS Nagai, GSM Dickel, RC Marinho, PEAM de Oliveira, ... PLoS ONE, 16(10), 2021 | 35 | 2021 |
| CrossTalkeR: analysis and visualization of ligand–receptor networks JS Nagai, NB Leimkühler, MT Schaub, RK Schneider, IG Costa Bioinformatics, 2021 | 32 | 2021 |
| Adult human kidney organoids originate from CD24+ cells and represent an advanced model for adult polycystic kidney disease Y Xu, C Kuppe, J Perales-Patón, S Hayat, J Kranz, AT Abdallah, J Nagai, ... Nature genetics 54 (11), 1690-1701, 2022 | 22 | 2022 |
| Human pluripotent stem cell-derived kidney organoids for personalized congenital and idiopathic nephrotic syndrome modeling J Jansen, BT van den Berge, M van den Broek, RJ Maas, D Daviran, ... Development 149 (9), dev200198, 2022 | 22 | 2022 |
| Microbial co-occurrence network and its key microorganisms in soil with permanent application of composted tannery sludge CK Ishimoto, AH Aono, JS Nagai, H Sousa, ARL Miranda, VMM Melo, ... Science of the Total Environment 789, 147945, 2021 | 20 | 2021 |
| The wild sugarcane and sorghum kinomes: Insights into expansion, diversification, and expression patterns AH Aono, RJG Pimenta, ALB Garcia, FH Correr, GK Hosaka, ... Frontiers in Plant Science 12, 668623, 2021 | 20 | 2021 |
| Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance AH Aono, EA Costa, HVS Rody, JS Nagai, RJG Pimenta, MC Mancini, ... Scientific Reports, 2020 | 18 | 2020 |
| Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell immunoprofiling F Schreibing, MT Hannani, H Kim, JS Nagai, F Ticconi, E Fewings, ... Frontiers in immunology 13, 1066176, 2022 | 15* | 2022 |
| scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference Z Li, JS Nagai, C Kuppe, R Kramann, IG Costa Bioinformatics Advances 3 (1), vbad003, 2023 | 7 | 2023 |
| Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT) M Joodaki, M Shaigan, V Parra, RD Bülow, C Kuppe, DL Hölscher, ... Molecular Systems Biology 20 (2), 57-74, 2024 | 6 | 2024 |
| Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance. Sci Rep 10: 20057 AH Aono, EA Costa, HVS Rody, JS Nagai, RJG Pimenta, MC Mancini, ... | 6 | 2020 |
| Single-cell analysis of cultured bone marrow stromal cells reveals high similarity to fibroblasts in situ USA Stalmann, B Banjanin, IAM Snoeren, JS Nagai, NB Leimkühler, R Li, ... Experimental Hematology 110, 28-33, 2022 | 4 | 2022 |
| Gene essentiality prediction using topological features from metabolic networks JS Nagai, H Sousa, AH Aono, AC Lorena, RM Kuroshu 2018 7th Brazilian Conference on Intelligent Systems (BRACIS), 91-96, 2018 | 3 | 2018 |
| Enhanced fatty acid oxidation through metformin and baicalin as therapy for COVID-19 and associated inflammatory states in lung and kidney V Miguel, C Rey-Serra, J Tituaña, B Sirera, E Alcalde-Estévez, JI Herrero, ... Redox Biology 68, 102957, 2023 | 2 | 2023 |
Ivan G. CostaProfessor, Institute of Computational Genomics, RWTH AachenVerified email at rwth-aachen.de
