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Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity C Angermueller, SJ Clark, HJ Lee, IC Macaulay, MJ Teng, TX Hu, ... Nature methods, 2016 | 743 | 2016 |
Dynamic CpG island methylation landscape in oocytes and preimplantation embryos SA Smallwood, S Tomizawa, F Krueger, N Ruf, N Carli, ... Nature genetics 43 (8), 811-814, 2011 | 738 | 2011 |
De novo DNA methylation: a germ cell perspective SA Smallwood, G Kelsey Trends in Genetics 28 (1), 33-42, 2012 | 505 | 2012 |
Multi-omics profiling of mouse gastrulation at single-cell resolution R Argelaguet, SJ Clark, H Mohammed, LC Stapel, C Krueger, ... Nature 576 (7787), 487-491, 2019 | 403 | 2019 |
Transcription is required for establishment of germline methylation marks at imprinted genes M Chotalia, SA Smallwood, N Ruf, C Dawson, D Lucifero, M Frontera, ... Genes & Development 23 (1), 105-117, 2009 | 374 | 2009 |
Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity SJ Clark, HJ Lee, SA Smallwood, G Kelsey, W Reik Genome Biology 17 (1), 1, 2016 | 325 | 2016 |
Nonlinear control of transcription through enhancer–promoter interactions J Zuin, G Roth, Y Zhan, J Cramard, J Redolfi, E Piskadlo, P Mach, ... Nature 604 (7906), 571-577, 2022 | 275 | 2022 |
Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq) SJ Clark, SA Smallwood, HJ Lee, F Krueger, W Reik, G Kelsey Nature Protocols 12 (3), 534-547, 2017 | 245 | 2017 |
Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape L Veselovska, SA Smallwood, H Saadeh, KR Stewart, F Krueger, ... Genome biology 16 (1), 1-17, 2015 | 208 | 2015 |
Dynamic changes in histone modifications precede de novo DNA methylation in oocytes KR Stewart, L Veselovska, J Kim, J Huang, H Saadeh, S Tomizawa, ... Genes & Development 29 (23), 2449-2462, 2015 | 200 | 2015 |
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Genome-wide Bisulfite Sequencing in Zygotes Identifies Demethylation Targets and Maps the Contribution of TET3 Oxidation JR Peat, W Dean, SJ Clark, F Krueger, SA Smallwood, G Ficz, JK Kim, ... Cell reports 9 (6), 1990-2000, 2014 | 139 | 2014 |
Cohesin and CTCF control the dynamics of chromosome folding P Mach, PI Kos, Y Zhan, J Cramard, S Gaudin, J Tünnermann, E Marchi, ... Nature Genetics, 1-12, 2022 | 137* | 2022 |
A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity PA Ginno, D Gaidatzis, A Feldmann, L Hoerner, D Imanci, L Burger, ... Nature Communications 11 (1), 1-16, 2020 | 125 | 2020 |
Continuous histone replacement by Hira is essential for normal transcriptional regulation and de novo DNA methylation during mouse oogenesis B Nashun, PWS Hill, SA Smallwood, G Dharmalingam, R Amouroux, ... Molecular cell 60 (4), 611-625, 2015 | 121 | 2015 |
Lysosomal signaling licenses embryonic stem cell differentiation via inactivation of Tfe3 F Villegas, D Lehalle, D Mayer, M Rittirsch, MB Stadler, M Zinner, ... Cell stem cell 24 (2), 257-270. e8, 2019 | 108 | 2019 |
Transcription and chromatin determinants of de novo DNA methylation timing in oocytes L Gahurova, S Tomizawa, SA Smallwood, KR Stewart-Morgan, H Saadeh, ... Epigenetics & Chromatin 10 (1), 25, 2017 | 91 | 2017 |
Genome-scale oscillations in DNA methylation during exit from pluripotency S Rulands, HJ Lee, SJ Clark, C Angermueller, SA Smallwood, F Krueger, ... Cell systems 7 (1), 63-76. e12, 2018 | 86 | 2018 |
DamC reveals principles of chromatin folding in vivo without crosslinking and ligation J Redolfi, Y Zhan, C Valdes-Quezada, M Kryzhanovska, I Guerreiro, ... Nature structural & molecular biology 26 (6), 471-480, 2019 | 82 | 2019 |