Farhan Quadir

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Jianlin ChengCurators' Distinguished Professor and Thompson Distinguished Professor, University of MissouriVerified email at missouri.edu
Raj Shekhor RoyUniversity of MissouriVerified email at mail.missouri.edu
Zhiye GuoUniveristy of MissouriVerified email at umsystem.edu
Tianqi WuResearch scientist at Vanderbilt UniversityVerified email at vanderbilt.edu
Randal HalfmannStowers Institute for Medical ResearchVerified email at stowers.org
Sajid MahmudPhD Student, University of Missouri - ColumbiaVerified email at umsystem.edu
Nabin GiriUniversity of MissouriVerified email at missouri.edu
Alex MoreheadPh.D. Candidate in Computer Science, University of Missouri-ColumbiaVerified email at mail.missouri.edu
Jie HouSaint Louis UniversityVerified email at slu.edu
Mu GaoGeorgia Institute of TechnologyVerified email at gatech.edu
Ada SedovaOak Ridge National LaboratoryVerified email at ornl.gov
Jeffrey SkolnickGeorgia Institute of TechnologyVerified email at gatech.edu
T. Chad EfflerPostdoctoral Research Associate, Oak Ridge National LabVerified email at ornl.gov
Peik Lund-AndersenUniversity of IdahoVerified email at vandals.uidaho.edu
Wael ElwasifOak Ridge National LaboratoryVerified email at ornl.gov
Dr. Sifat MomenAssociate Professor, Department of Electrical and Computer Engineering, North South UniversityVerified email at northsouth.edu

Farhan Quadir

PhD Student and Graduate Research Assistant of Computer Science, University of Missouri

Verified email at mail.missouri.edu - Homepage

Bioinformatics Machine Learning Data Mining Simulation AI


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Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021	81	2021
A deep dilated convolutional residual network for predicting interchain contacts of protein homodimers RS Roy, F Quadir, E Soltanikazemi, J Cheng Bioinformatics 38 (7), 1904-1910, 2022	35	2022
DNCON2_Inter: predicting interchain contacts for homodimeric and homomultimeric protein complexes using multiple sequence alignments of monomers and deep learning F Quadir, RS Roy, R Halfmann, J Cheng Scientific reports 11 (1), 12295, 2021	27*	2021
The MULTICOM Protein Structure Prediction Server Empowered by Deep Learning and Contact Distance Prediction J Hou, T Wu, Z Guo, F Quadir, J Cheng Protein Structure Prediction, 13-26, 2020	26	2020
DeepComplex: a web server of predicting protein complex structures by deep learning inter-chain contact prediction and distance-based modelling F Quadir, RS Roy, E Soltanikazemi, J Cheng Frontiers in Molecular Biosciences 8, 716973, 2021	21	2021
Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15 J Liu, Z Guo, T Wu, RS Roy, F Quadir, C Chen, J Cheng Communications Biology 6 (1), 1140, 2023	16	2023
Impact of AlphaFold on structure prediction of protein complexes: the CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023	15	2023
Distance‐based reconstruction of protein quaternary structures from inter‐chain contacts E Soltanikazemi, F Quadir, RS Roy, Z Guo, J Cheng Proteins: Structure, Function, and Bioinformatics 90 (3), 720-731, 2022	13	2022
High-performance deep learning toolbox for genome-scale prediction of protein structure and function M Gao, P Lund-Andersen, A Morehead, S Mahmud, C Chen, X Chen, ... 2021 IEEE/ACM Workshop on Machine Learning in High Performance Computing …, 2021	10	2021
Multi-Head Attention-based U-Nets for Predicting Protein Domain Boundaries Using 1D Sequence Features and 2D Distance Maps S Mahmud, Z Guo, F Quadir, J Liu, J Cheng BMC Bioinformatics 23 (283), 1-15, 2022	6	2022
Drlcomplex: Reconstruction of protein quaternary structures using deep reinforcement learning E Soltanikazemi, RS Roy, F Quadir, N Giri, A Morehead, J Cheng arXiv preprint arXiv:2205.13594, 2022	5*	2022
Visualization and queuing analysis of spatio-temporal traffic data F Quadir, MF Al Ameen, S Momen 2014 17th international conference on computer and information technology …, 2014	4	2014
Predicted structural proteome of Sphagnum divinum and proteome-scale annotation RB Davidson, M Coletti, M Gao, B Piatkowski, A Sreedasyam, F Quadir, ... Bioinformatics 39 (8), btad511, 2023	1	2023
Deep learning systems and methods for predicting structural aspects of protein-related complexes J Cheng, E Soltanikazemi, RS Roy, F Quadir US Patent App. 17/988,461, 2023		2023

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