Tomaž Curk

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Blaz ZupanUniversity of LjubljanaVerified email at fri.uni-lj.si
Jernej UleThe Francis Crick Institute, UK Dementia Research Institute at King's, Institute of ChemistryVerified email at crick.ac.uk
Gregor RotUniversity of Zurich, SwitzerlandVerified email at uzh.ch
Nicholas LuscombeOkinawa Institute of Science and Technology Graduate UniversityVerified email at oist.jp
Kathi ZarnackBuchmann Institute for Molecular Life Sciences (BMLS)Verified email at bmls.de
Julian KönigInstitute of Molecular Biology, MainzVerified email at imb-mainz.de
Uros PetrovicFull Professor (Genetics, Molecular Biology) and PI (Functional Genomics, Biotechnology)Verified email at ijs.si
Nejc HabermanImperial College Research FellowVerified email at ic.ac.uk
Boris RogeljProfessorVerified email at kcl.ac.uk
Christopher E ShawInstitute of Psychiatry, King's College LondonVerified email at kcl.ac.uk
Marinka ZitnikAssistant Professor, Harvard UniversityVerified email at hms.harvard.edu
Tomaž HočevarAssoc. Prof., University of LjubljanaVerified email at fri.uni-lj.si
Gregor LebanJozef Stefan InstituteVerified email at ijs.si
Chris SibleyEdinburgh UniversityVerified email at ed.ac.uk
Tibor HortobágyiUniversitätsspital Zürich, CH; University of Debrecen, Hungary; King's College London, UKVerified email at usz.ch
Lan UmekAssociate Professor, Vice-dean for scientific researchVerified email at fu.uni-lj.si
Adam KuspaThe Welch FoundationVerified email at welch1.org
Rickie PataniProfessor, MRC Senior Clinical Fellow & Consultant Neurologist @ The Francis Crick Institute & UCLVerified email at ucl.ac.uk
Agnes NishimuraKing's College LondonVerified email at kcl.ac.uk
Alfredo CastellóMRC University of Glasgow Centre for Virus ResearchVerified email at glasgow.ac.uk

Tomaž Curk

University of Ljubljana, Faculty of Computer and Information Science

Verified email at fri.uni-lj.si - Homepage

Bioinformatics protein-RNA interactions Data Mining Artificial Intelligence


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Orange: data mining toolbox in Python J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ... the Journal of machine Learning research 14 (1), 2349-2353, 2013	2550	2013
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution J König, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ... Nature structural & molecular biology 17 (7), 909-915, 2010	1256	2010
Characterizing the RNA targets and position-dependent splicing regulation by TDP-43 JR Tollervey, T Curk, B Rogelj, M Briese, M Cereda, M Kayikci, J König, ... Nature neuroscience 14 (4), 452-458, 2011	1255	2011
Orange: From experimental machine learning to interactive data mining J Demšar, B Zupan, G Leban, T Curk Knowledge Discovery in Databases: PKDD 2004: 8th European Conference on …, 2004	634	2004
Comprehensive identification of RNA-binding domains in human cells A Castello, B Fischer, CK Frese, R Horos, AM Alleaume, S Foehr, T Curk, ... Molecular cell 63 (4), 696-710, 2016	621	2016
The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs BM Beckmann, R Horos, B Fischer, A Castello, K Eichelbaum, ... Nature communications 6 (1), 10127, 2015	472	2015
Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain B Rogelj, LE Easton, GK Bogu, LW Stanton, G Rot, T Curk, B Zupan, ... Scientific reports 2 (1), 603, 2012	334	2012
SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export M Müller-McNicoll, V Botti, AM de Jesus Domingues, H Brandl, ... Genes & development 30 (5), 553-566, 2016	305	2016
The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes ML Änkö, M Müller-McNicoll, H Brandl, T Curk, C Gorup, I Henry, J Ule, ... Genome biology 13, 1-17, 2012	299	2012
ROC curve, lift chart and calibration plot M Vuk, T Curk Metodoloski zvezki 3 (1), 89, 2006	287	2006
Analysis of alternative splicing associated with aging and neurodegeneration in the human brain JR Tollervey, Z Wang, T Hortobágyi, JT Witten, K Zarnack, M Kayikci, ... Genome research 21 (10), 1572-1582, 2011	270	2011
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions Y Sugimoto, J König, S Hussain, B Zupan, T Curk, M Frye, J Ule Genome biology 13, 1-13, 2012	267	2012
iCLIP predicts the dual splicing effects of TIA-RNA interactions Z Wang, M Kayikci, M Briese, K Zarnack, NM Luscombe, G Rot, B Zupan, ... PLoS biology 8 (10), e1000530, 2010	267	2010
iCLIP-transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution J Konig, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ... JoVE (Journal of Visualized Experiments), e2638, 2011	247	2011
Conserved developmental transcriptomes in evolutionarily divergent species A Parikh, ER Miranda, M Katoh-Kurasawa, D Fuller, G Rot, L Zagar, ... Genome biology 11, 1-12, 2010	209	2010
Microarray data mining with visual programming T Curk, J Demsar, Q Xu, G Leban, U Petrovic, I Bratko, G Shaulsky, ... Bioinformatics 21 (3), 396-398, 2005	202	2005
The RNA-binding protein HuR is essential for the B cell antibody response MD Diaz-Muñoz, SE Bell, K Fairfax, E Monzon-Casanova, ... Nature immunology 16 (4), 415-425, 2015	168	2015
Polymorphic members of the lag gene family mediate kin discrimination in Dictyostelium R Benabentos, S Hirose, R Sucgang, T Curk, M Katoh, EA Ostrowski, ... Current biology 19 (7), 567-572, 2009	167	2009
Recursive splicing in long vertebrate genes CR Sibley, W Emmett, L Blazquez, A Faro, N Haberman, M Briese, ... Nature 521 (7552), 371-375, 2015	164	2015
Yeast as a cell factory: current state and perspectives M Kavšček, M Stražar, T Curk, K Natter, U Petrovič Microbial cell factories 14 (4), 2015	155	2015

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