Haiyan Hu
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Mining coherent dense subgraphs across massive biological networks for functional discovery
H Hu, X Yan, Y Huang, J Han, XJ Zhou
Bioinformatics 21 (suppl_1), i213-i221, 2005
TarPmiR: a new approach for microRNA target site prediction
J Ding, X Li, H Hu
Bioinformatics 32 (18), 2768-2775, 2016
Systematic discovery of functional modules and context-specific functional annotation of human genome
Y Huang, H Li, H Hu, X Yan, MS Waterman, H Huang, XJ Zhou
Bioinformatics 23 (13), i222-i229, 2007
H3K4me2 reliably defines transcription factor binding regions in different cells
Y Wang, X Li, H Hu
Genomics 103 (2-3), 222-228, 2014
Transcriptional regulation of co-expressed microRNA target genes
Y Wang, X Li, H Hu
Genomics 98 (6), 445-452, 2011
Transcriptional regulation in eukaryotic ribosomal protein genes
H Hu, X Li
Genomics 90 (4), 421-423, 2007
Interpretation of deep learning in genomics and epigenomics
A Talukder, C Barham, X Li, H Hu
Briefings in Bioinformatics 22 (3), bbaa177, 2021
MBBC: an efficient approach for metagenomic binning based on clustering
Y Wang, H Hu, X Li
BMC bioinformatics 16 (1), 1-11, 2015
MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs
J Hu, H Hu, X Li
Nucleic acids research 36 (13), 4488-4497, 2008
Thousands of cis-regulatory sequence combinations are shared by Arabidopsis and poplar
J Ding, H Hu, X Li
Plant physiology 158 (1), 145-155, 2012
SIOMICS: a novel approach for systematic identification of motifs in ChIP-seq data
J Ding, H Hu, X Li
Nucleic acids research 42 (5), e35-e35, 2014
Systematic identification of conserved motif modules in the human genome
X Cai, L Hou, N Su, H Hu, M Deng, X Li
BMC genomics 11 (1), 1-10, 2010
MicroRNA modules prefer to bind weak and unconventional target sites
J Ding, X Li, H Hu
Bioinformatics 31 (9), 1366-1374, 2015
PETModule: a motif module based approach for enhancer target gene prediction
C Zhao, X Li, H Hu
Scientific reports 6 (1), 1-10, 2016
Integrative analyses shed new light on human ribosomal protein gene regulation
X Li, Y Zheng, H Hu, X Li
Scientific reports 6 (1), 1-9, 2016
Systematic prediction of cis-regulatory elements in the Chlamydomonas reinhardtii genome using comparative genomics
J Ding, X Li, H Hu
Plant physiology 160 (2), 613-623, 2012
Prognostic cancer gene signatures share common regulatory motifs
Y Wang, S Goodison, X Li, H Hu
Scientific reports 7 (1), 1-9, 2017
Systematic discovery of cofactor motifs from ChIP-seq data by SIOMICS
J Ding, V Dhillon, X Li, H Hu
Methods 79, 47-51, 2015
JunD/AP-1-mediated gene expression promotes lymphocyte growth dependent on interleukin-7 signal transduction
SM Ruppert, M Chehtane, G Zhang, H Hu, X Li, AR Khaled
PLoS One 7 (2), e32262, 2012
EPIP: a novel approach for condition-specific enhancer–promoter interaction prediction
A Talukder, S Saadat, X Li, H Hu
Bioinformatics 35 (20), 3877-3883, 2019
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