WCOACH: protein complex prediction in weighted PPI networks M Kouhsar, F Zare-Mirakabad, Y Jamali Genes & genetic systems 90 (5), 317-324, 2015 | 31 | 2015 |
Genetic algorithm for dyad pattern finding in DNA sequences F Zare-Mirakabad, H Ahrabian, M Sadeghi, S Hashemifar, ... Genes & genetic systems 84 (1), 81-93, 2009 | 28 | 2009 |
The assessment of efficient representation of drug features using deep learning for drug repositioning M Moridi, M Ghadirinia, A Sharifi-Zarchi, F Zare-Mirakabad BMC bioinformatics 20, 1-11, 2019 | 23 | 2019 |
Transcription factor binding sites prediction based on modified nucleosomes M Talebzadeh, F Zare-Mirakabad PLoS One 9 (2), e89226, 2014 | 19 | 2014 |
New scoring schema for finding motifs in DNA Sequences F Zare-Mirakabad, H Ahrabian, M Sadeghi, A Nowzari-Dalini, B Goliaei Bmc Bioinformatics 10, 1-21, 2009 | 19 | 2009 |
Evolutionary algorithm for RNA secondary structure prediction based on simulated SHAPE data S Montaseri, M Ganjtabesh, F Zare-Mirakabad PloS one 11 (11), e0166965, 2016 | 15 | 2016 |
RNA-RNA interaction prediction using genetic algorithm S Montaseri, F Zare-Mirakabad, N Moghadam-Charkari Algorithms for Molecular Biology 9, 1-7, 2014 | 12 | 2014 |
Protein sequence profile prediction using ProtAlbert transformer A Behjati, F Zare-Mirakabad, SS Arab, A Nowzari-Dalini Computational Biology and Chemistry 99, 107717, 2022 | 11* | 2022 |
EIA-CNDP: An exact iterative algorithm for critical node detection problem J Rezaei, F Zare-Mirakabad, SA MirHassani, SA Marashi Computers & Operations Research 127, 105138, 2021 | 8 | 2021 |
Evaluating the accuracy of protein design using native secondary sub-structures M Movahedi, F Zare-Mirakabad, SS Arab BMC bioinformatics 17, 1-11, 2016 | 8 | 2016 |
Inverse RNA folding solution based on multi-objective genetic algorithm and Gibbs sampling method M Ganjtabesh, F Zare-Mirakabad, A Nowzari-Dalini EXCLI journal 12, 546, 2013 | 7 | 2013 |
Drugrep-kg: Toward learning a unified latent space for drug repurposing using knowledge graphs Z Ghorbanali, F Zare-Mirakabad, M Akbari, N Salehi, A Masoudi-Nejad Journal of Chemical Information and Modeling 63 (8), 2532-2545, 2023 | 6 | 2023 |
PSOMF: An algorithm for pattern discovery using PSO F Zare-Mirakabad, H Ahrabian, M Sadeghi, J Mohammadzadeh, ... Proceedings of the Third IAPR International Conferences on Pattern …, 2008 | 6 | 2008 |
The outward shift of clarithromycin binding to the ribosome in mutant Helicobacter pylori strains N Salehi, B Attaran, F Zare‐Mirakabad, B Ghadiri, M Esmaeili, ... Helicobacter 25 (6), e12731, 2020 | 5 | 2020 |
RNA secondary structure prediction based on SHAPE data in helix regions M Lotfi, F Zare-Mirakabad, S Montaseri Journal of theoretical biology 380, 178-182, 2015 | 5 | 2015 |
A stochastic model of DNA double-strand breaks repair throughout the cell cycle FS Mohseni-Salehi, F Zare-Mirakabad, M Sadeghi, S Ghafouri-Fard Bulletin of Mathematical Biology 82, 1-36, 2020 | 4 | 2020 |
RNAComp: A new method for RNA secondary structure alignment F Zare-Mirakabad, M Sadeghi, H Ahrabian, A Nowzari-Dalini Match 61 (3), 789, 2009 | 4 | 2009 |
Draft Genome Sequence of Pseudomonas aeruginosa strain LMG 1272, an atypical white line reaction producer F Salari, F Zare-Mirakabad, MH Alavi, L Girard, M Ghafari, R De Mot, ... Microbiology Resource Announcements 9 (7), 10.1128/mra. 01363-19, 2020 | 3 | 2020 |
Assessing the impact of exact reads on reducing the error rate of read mapping F Salari, F Zare-Mirakabad, M Sadeghi, H Rokni-Zadeh BMC bioinformatics 19, 1-15, 2018 | 3 | 2018 |
Evaluating the quality of SHAPE data simulated by k-mers for RNA structure prediction S Montaseri, F Zare-Mirakabad, M Ganjtabesh Journal of Bioinformatics and Computational Biology 15 (06), 1750023, 2017 | 3 | 2017 |