Simon Anders
Simon Anders
Bioquant Center, University of Heidelberg
Verified email at - Homepage
Cited by
Cited by
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
MI Love, W Huber, S Anders
Genome biology 15, 1-21, 2014
HTSeq—a Python framework to work with high-throughput sequencing data
S Anders, PT Pyl, W Huber
bioinformatics 31 (2), 166-169, 2015
Differential expression analysis for sequence count data
S Anders, W Huber
Genome Biology 11, R106, 2010
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
Detecting differential usage of exons from RNA-seq data
S Anders, A Reyes, W Huber
Nature Precedings, 1-1, 2012
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
S Anders, DJ McCarthy, Y Chen, M Okoniewski, GK Smyth, W Huber, ...
Nature protocols 8 (9), 1765-1786, 2013
Accounting for technical noise in single-cell RNA-seq experiments
P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ...
Nature methods 10 (11), 1093-1095, 2013
Differential expression of RNA-Seq data at the gene level–the DESeq package
S Anders, W Huber
Heidelberg, Germany: European Molecular Biology Laboratory (EMBL) 10 …, 2012
Differential analysis of count data–the DESeq2 package
M Love, S Anders, W Huber
Genome Biol 15 (550), 10-1186, 2014
A colorimetric RT-LAMP assay and LAMP-sequencing for detecting SARS-CoV-2 RNA in clinical samples
VL Dao Thi, K Herbst, K Boerner, M Meurer, LPM Kremer, D Kirrmaier, ...
Science translational medicine 12 (556), eabc7075, 2020
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
M Morgan, S Anders, M Lawrence, P Aboyoun, H Pagès, R Gentleman
Bioinformatics 25 (19), 2607-2608, 2009
Gene expression across mammalian organ development
M Cardoso-Moreira, J Halbert, D Valloton, B Velten, C Chen, Y Shao, ...
Nature 571 (7766), 505-509, 2019
Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements
K Zarnack, J König, M Tajnik, I Martincorena, S Eustermann, I Stévant, ...
Cell 152 (3), 453-466, 2013
Analysing high-throughput sequencing data in Python with HTSeq 2.0
GH Putri, S Anders, PT Pyl, JE Pimanda, F Zanini
Bioinformatics 38 (10), 2943-2945, 2022
RNA-Seq workflow: gene-level exploratory analysis and differential expression
MI Love, S Anders, V Kim, W Huber
F1000Research 4, 2015
Quiescence modulates stem cell maintenance and regenerative capacity in the aging brain
G Kalamakis, D Brüne, S Ravichandran, J Bolz, W Fan, F Ziebell, T Stiehl, ...
Cell 176 (6), 1407-1419. e14, 2019
Analysing RNA-Seq data with the DESeq package
S Anders
Mol Biol 43 (4), 1-17, 2010
Fast simulation of stabilizer circuits using a graph-state representation
S Anders, HJ Briegel
Physical Review A—Atomic, Molecular, and Optical Physics 73 (2), 022334, 2006
HTSeq: Analysing high-throughput sequencing data with Python
S Anders, PT Pyl, W Huber
Genome-wide analysis of mRNA decay patterns during early Drosophiladevelopment
S Thomsen, S Anders, SC Janga, W Huber, CR Alonso
Genome biology 11, 1-27, 2010
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