Gary Bader

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Ruth IsserlinDonnelly Centre, University of TorontoVerified email at utoronto.ca
Christopher HogueIndependentVerified email at blueprint.org
Charles BooneProfessor, Donnelly Centre, University of TorontoVerified email at utoronto.ca
Max FranzUniversity of TorontoVerified email at utoronto.ca
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Jüri ReimandAssociate professor, Ontario Institute for Cancer Research, University of TorontoVerified email at utoronto.ca
Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Daniele MericoVevo Tx / TCAG (SickKids)Verified email at vevo.ai
John E. DickUniversity of TorontoVerified email at uhnresearch.ca
Jeff LiuUniversity Health NetworkVerified email at utoronto.ca
John H MorrisUCSFVerified email at cgl.ucsf.edu
Brenda AndrewsDirector, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Brendan T InnesUniversity of TorontoVerified email at mail.utoronto.ca
Emek DemirOHSUVerified email at ohsu.edu
Alexander R PicoGladstone InstitutesVerified email at gladstone.ucsf.edu
Amy TongUniversity of TorontoVerified email at utoronto.ca
Bo WangChief AI Scientist,UHN; CIFAR AI Chair, Vector Institute; Assistant Professor, U of TorontoVerified email at vectorinstitute.ai
Mike TyersThe Hospital for Sick ChildrenVerified email at sickkids.ca
John GiorgiPh.D. Computer Science Candidate, University of TorontoVerified email at utoronto.ca
Igor RodchenkovUniversity of TorontoVerified email at utoronto.ca

Gary Bader

Professor of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto

Verified email at utoronto.ca - Homepage

Computational Biology Systems Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An automated method for finding molecular complexes in large protein interaction networks GD Bader, CWV Hogue BMC bioinformatics 4, 1-27, 2003	6101	2003
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry Y Ho, A Gruhler, A Heilbut, GD Bader, L Moore, SL Adams, A Millar, ... Nature 415 (6868), 180-183, 2002	4602	2002
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function D Warde-Farley, SL Donaldson, O Comes, K Zuberi, R Badrawi, P Chao, ... Nucleic acids research 38 (suppl_2), W214-W220, 2010	4255	2010
Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007	2773	2007
Systematic genetic analysis with ordered arrays of yeast deletion mutants AHY Tong, M Evangelista, AB Parsons, H Xu, GD Bader, N Pagé, ... Science 294 (5550), 2364-2368, 2001	2637	2001
Global mapping of the yeast genetic interaction network AHY Tong, G Lesage, GD Bader, H Ding, H Xu, X Xin, J Young, GF Berriz, ... science 303 (5659), 808-813, 2004	2553	2004
The genetic landscape of a cell M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ... science 327 (5964), 425-431, 2010	2526	2010
A draft map of the human proteome MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda, R Chaerkady, ... Nature 509 (7502), 575-581, 2014	2507	2014
Functional impact of global rare copy number variation in autism spectrum disorders D Pinto, AT Pagnamenta, L Klei, R Anney, D Merico, R Regan, J Conroy, ... Nature 466 (7304), 368-372, 2010	2351	2010
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation D Merico, R Isserlin, O Stueker, A Emili, GD Bader PloS one 5 (11), e13984, 2010	2240	2010
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020	1870*	2020
BIND: the biomolecular interaction network database GD Bader, D Betel, CWV Hogue Nucleic acids research 31 (1), 248-250, 2003	1581	2003
Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap Nature Protocols 14, 482–517, 2019	1569	2019
A travel guide to Cytoscape plugins R Saito, ME Smoot, K Ono, J Ruscheinski, PL Wang, S Lotia, AR Pico, ... Nature methods 9 (11), 1069-1076, 2012	1528	2012
Association analysis identifies 65 new breast cancer risk loci K Michailidou, S Lindström, J Dennis, J Beesley, S Hui, S Kar, A Lemaçon, ... Nature 551 (7678), 92-94, 2017	1431	2017
The reactome pathway knowledgebase 2022 M Gillespie, B Jassal, R Stephan, M Milacic, K Rothfels, A Senff-Ribeiro, ... Nucleic acids research 50 (D1), D687-D692, 2022	1430	2022
Pathway Commons, a web resource for biological pathway data EG Cerami, BE Gross, E Demir, I Rodchenkov, Ö Babur, N Anwar, ... Nucleic acids research 39 (suppl_1), D685-D690, 2010	1296	2010
Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations SA MacParland, JC Liu, XZ Ma, BT Innes, AM Bartczak, BK Gage, ... Nature communications 9 (1), 4383, 2018	1177	2018
Molecular classification of ependymal tumors across all CNS compartments, histopathological grades, and age groups KW Pajtler, H Witt, M Sill, DTW Jones, V Hovestadt, F Kratochwil, K Wani, ... Cancer cell 27 (5), 728-743, 2015	1138	2015
Bioinformatics AD Baxevanis, GD Bader, DS Wishart John Wiley & Sons, 2020	1116	2020

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