Manimozhiyan Arumugam

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Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Daniel R. MendeAsst. Professor, Amsterdam University Medical Center, University of AmsterdamVerified email at amsterdamumc.nl
Shinichi SunagawaETH Zurich; Swiss Institute of BioinformaticsVerified email at ethz.ch
Torben HansenProfessor of Metabolic Genetics, University of Copenhagen, DenmarkVerified email at sund.ku.dk
Jens Roat KultimaDanish Competition and Consumer Agency; Bioinformatics and Economic Fraud SpecialistVerified email at kfst.dk
Jeroen RaesProfessor, Faculty of Medicine, Rega Institute, KU Leuven; Group Leader Microbiome, VIB, BelgiumVerified email at med.kuleuven.be
Oluf PedersenProfessor of Metabolic Genetics, University of CopenhagenVerified email at sund.ku.dk
Jonel TrebickaProfessor, Goethe University of FrankfurtVerified email at kgu.de
Alison S. WallerBrock UniversityVerified email at brocku.ca
Henrik Bjørn NielsenCSO at Clinical-Microbiomics A/SVerified email at clinical-microbiomics.com
Julien TapINRAEVerified email at inrae.fr
Willem M de VosProfessor @ Microbiology Wageningen Netherlands @Helsinki FinlandVerified email at wur.nl
Michael BrentWashington UniversityVerified email at wustl.edu
Camila Alvarez-SilvaUniversity of CopenhagenVerified email at sund.ku.dk
Sofia K. ForslundJunior Group Leader, ECRC (joint Max Delbrück Center and Charité University Hospital unit), BerlinVerified email at embl.de
Vera van Noortprofessor, KULeuvenVerified email at biw.kuleuven.be
Benjamin LelouvierVaiomerVerified email at vaiomer.com
Luis Pedro CoelhoISTBI, Fudan UniversityVerified email at fudan.edu.cn
Nassos TypasGroup Leader, EMBLVerified email at embl.de
George WeinstockDirector of Microbial Genomics, Professor, Jackson LaboratoryVerified email at jax.org

Manimozhiyan Arumugam

Associate Professor, Faculty of Health and Medical Sciences, University of Copenhagen

Verified email at sund.ku.dk - Homepage

Microbiome Systems Biology Microbiome Data Science Human Microbiome Human Microbiota


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A human gut microbial gene catalogue established by metagenomic sequencing J Qin, R Li, J Raes, M Arumugam, KS Burgdorf, C Manichanh, T Nielsen, ... nature 464 (7285), 59-65, 2010	11730	2010
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	9302	2019
Enterotypes of the human gut microbiome M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ... Nature 473 (7346), 174-180, 2011	7271	2011
Richness of human gut microbiome correlates with metabolic markers E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ... Nature 500 (7464), 541-546, 2013	4204	2013
Genome sequence of the Brown Norway rat yields insights into mammalian evolution University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ... Nature 428 (6982), 493-521, 2004	2460	2004
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota K Forslund, F Hildebrand, T Nielsen, G Falony, E Le Chatelier, ... Nature 528 (7581), 262-266, 2015	1766	2015
An integrated catalog of reference genes in the human gut microbiome J Li, H Jia, X Cai, H Zhong, Q Feng, S Sunagawa, M Arumugam, ... Nature biotechnology 32 (8), 834-841, 2014	1756	2014
Human gut microbes impact host serum metabolome and insulin sensitivity HK Pedersen, V Gudmundsdottir, HB Nielsen, T Hyotylainen, T Nielsen, ... Nature 535 (7612), 376-381, 2016	1482	2016
Gut microbiome development along the colorectal adenoma–carcinoma sequence Q Feng, S Liang, H Jia, A Stadlmayr, L Tang, Z Lan, D Zhang, H Xia, X Xu, ... Nature communications 6 (1), 6528, 2015	966	2015
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014	946	2014
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	858	2018
Genomic variation landscape of the human gut microbiome S Schloissnig, M Arumugam, S Sunagawa, M Mitreva, J Tap, A Zhu, ... Nature 493 (7430), 45-50, 2013	853	2013
Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer J Yu, Q Feng, SH Wong, D Zhang, Q yi Liang, Y Qin, L Tang, H Zhao, ... Gut 66 (1), 70-78, 2017	792	2017
Enterotypes in the landscape of gut microbial community composition PI Costea, F Hildebrand, M Arumugam, F Bäckhed, MJ Blaser, ... Nature microbiology 3 (1), 8-16, 2018	714	2018
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ... Nature medicine 25 (4), 679-689, 2019	653	2019
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ... Nature biotechnology 29 (5), 415-420, 2011	653	2011
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates EG Zoetendal, J Raes, B Van Den Bogert, M Arumugam, CCGM Booijink, ... The ISME journal 6 (7), 1415-1426, 2012	648	2012
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019	523	2019
Transcriptome complexity in a genome-reduced bacterium M Güell, V Van Noort, E Yus, WH Chen, J Leigh-Bell, K Michalodimitrakis, ... Science 326 (5957), 1268-1271, 2009	510	2009
Recovery of gut microbiota of healthy adults following antibiotic exposure A Palleja, KH Mikkelsen, SK Forslund, A Kashani, KH Allin, T Nielsen, ... Nature microbiology 3 (11), 1255-1265, 2018	468	2018

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