Optimal algorithms for haplotype assembly from whole-genome sequence data D He, A Choi, K Pipatsrisawat, A Darwiche, E Eskin Bioinformatics 26 (12), i183-i190, 2010 | 160 | 2010 |
Topic dynamics: an alternative model of bursts in streams of topics D He, DS Parker Proceedings of the 16th ACM SIGKDD international conference on Knowledge …, 2010 | 154 | 2010 |
Topical semantics of twitter links MJ Welch, U Schonfeld, D He, J Cho Proceedings of the fourth ACM international conference on Web search and …, 2011 | 144 | 2011 |
Spectral clustering of large-scale data by directly solving normalized cut X Chen, W Hong, F Nie, D He, M Yang, JZ Huang Proceedings of the 24th ACM SIGKDD International Conference on Knowledge …, 2018 | 71 | 2018 |
Novel applications of multitask learning and multiple output regression to multiple genetic trait prediction D He, D Kuhn, L Parida Bioinformatics 32 (12), i37-i43, 2016 | 70 | 2016 |
An optimal weighted aggregated association test for identification of rare variants involved in common diseases JH Sul, B Han, D He, E Eskin Genetics 188 (1), 181-188, 2011 | 56 | 2011 |
Accounting for population structure in gene-by-environment interactions in genome-wide association studies using mixed models JH Sul, M Bilow, WY Yang, E Kostem, N Furlotte, D He, E Eskin PLoS genetics 12 (3), e1005849, 2016 | 54 | 2016 |
Identifying genetic relatives without compromising privacy D He, NA Furlotte, F Hormozdiari, JWJ Joo, A Wadia, R Ostrovsky, ... Genome research 24 (4), 664-672, 2014 | 49 | 2014 |
Cleansing noisy data streams X Zhu, P Zhang, X Wu, D He, C Zhang, Y Shi 2008 Eighth IEEE International Conference on Data Mining, 1139-1144, 2008 | 36 | 2008 |
Efficient algorithms for polyploid haplotype phasing D He, S Saha, R Finkers, L Parida BMC genomics 19, 171-180, 2018 | 31 | 2018 |
Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data WY Yang, F Hormozdiari, Z Wang, D He, B Pasaniuc, E Eskin Bioinformatics 29 (18), 2245-2252, 2013 | 30 | 2013 |
CLAP: Collaborative pattern mining for distributed information systems X Zhu, B Li, X Wu, D He, C Zhang Decision support systems 52 (1), 40-51, 2011 | 26 | 2011 |
MINT: mutual information based transductive feature selection for genetic trait prediction D He, I Rish, D Haws, L Parida IEEE/ACM transactions on computational biology and bioinformatics 13 (3 …, 2015 | 25 | 2015 |
Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data D He, B Han, E Eskin Journal of Computational Biology 20 (2), 80-92, 2013 | 25 | 2013 |
SAIL-APPROX: An efficient on-line algorithm for approximate pattern matching with wildcards and length constraints D He, X Wu, X Zhu 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2007 | 25 | 2007 |
IPED: inheritance path-based pedigree reconstruction algorithm using genotype data D He, Z Wang, B Han, L Parida, E Eskin Journal of Computational Biology 20 (10), 780-791, 2013 | 24 | 2013 |
Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions D He, F Hormozdiari, N Furlotte, E Eskin Bioinformatics 27 (11), 1513-1520, 2011 | 24 | 2011 |
Variable-selection emerges on top in empirical comparison of whole-genome complex-trait prediction methods DC Haws, I Rish, S Teyssedre, D He, AC Lozano, P Kambadur, ... PloS one 10 (10), e0138903, 2015 | 23 | 2015 |
Using suffix tree to discover complex repetitive patterns in DNA sequences D He 2006 International Conference of the IEEE Engineering in Medicine and …, 2006 | 21 | 2006 |
Does encoding matter? A novel view on the quantitative genetic trait prediction problem D He, L Parida BMC bioinformatics 17, 1-9, 2016 | 20 | 2016 |