Peter Kharchenko
Peter Kharchenko
Altos Labs
Verified email at - Homepage
Cited by
Cited by
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
RNA velocity of single cells
G La Manno, R Soldatov, A Zeisel, E Braun, H Hochgerner, V Petukhov, ...
Nature 560 (7719), 494-498, 2018
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing
D Usoskin, A Furlan, S Islam, H Abdo, P Lönnerberg, D Lou, ...
Nature neuroscience 18 (1), 145-153, 2015
Bayesian approach to single-cell differential expression analysis
PV Kharchenko, L Silberstein, DT Scadden
Nature methods 11 (7), 740-742, 2014
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
Design and analysis of ChIP-seq experiments for DNA-binding proteins
PV Kharchenko, MY Tolstorukov, PJ Park
Nature biotechnology 26 (12), 1351-1359, 2008
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
PV Kharchenko, AA Alekseyenko, YB Schwartz, A Minoda, NC Riddle, ...
Nature 471 (7339), 480-485, 2011
Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain
BB Lake, S Chen, BC Sos, J Fan, GE Kaeser, YC Yung, TE Duong, D Gao, ...
Nature biotechnology 36 (1), 70-80, 2018
Landscape of somatic retrotransposition in human cancers
E Lee, R Iskow, L Yang, O Gokcumen, P Haseley, LJ Luquette III, JG Lohr, ...
Science 337 (6097), 967-971, 2012
An assessment of histone-modification antibody quality
TA Egelhofer, A Minoda, S Klugman, K Lee, P Kolasinska-Zwierz, ...
Nature structural & molecular biology 18 (1), 91-93, 2011
The genomic binding sites of a noncoding RNA
MD Simon, CI Wang, PV Kharchenko, JA West, BA Chapman, ...
Proceedings of the National Academy of Sciences 108 (51), 20497-20502, 2011
Comparative analysis of metazoan chromatin organization
JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ...
Nature 512 (7515), 449-452, 2014
Spatiotemporal structure of cell fate decisions in murine neural crest
R Soldatov, M Kaucka, ME Kastriti, J Petersen, T Chontorotzea, ...
Science 364 (6444), eaas9536, 2019
Comparative cellular analysis of motor cortex in human, marmoset and mouse
TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ...
Nature 598 (7879), 111-119, 2021
A region of the human HOXD cluster that confers polycomb-group responsiveness
CJ Woo, PV Kharchenko, L Daheron, PJ Park, RE Kingston
Cell 140 (1), 99-110, 2010
Locally disordered methylation forms the basis of intratumor methylome variation in chronic lymphocytic leukemia
DA Landau, K Clement, MJ Ziller, P Boyle, J Fan, H Gu, K Stevenson, ...
Cancer cell 26 (6), 813-825, 2014
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b Shendure Jay 9 Trapnell Cole ...
Nature 574 (7777), 187-192, 2019
Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis
J Fan, N Salathia, R Liu, GE Kaeser, YC Yung, JL Herman, F Kaper, ...
Nature methods 13 (3), 241-244, 2016
Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2
H Specht, E Emmott, AA Petelski, RG Huffman, DH Perlman, M Serra, ...
Genome biology 22, 1-27, 2021
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