| CutProtFam-Pred: detection and classification of putative structural cuticular proteins from sequence alone, based on profile hidden Markov models ZS Ioannidou, MC Theodoropoulou, NC Papandreou, JH Willis, ... Insect biochemistry and molecular biology 52, 51-59, 2014 | 113 | 2014 |
| Interactions of the α-subunits of heterotrimeric G-proteins with GPCRs, effectors and RGS proteins: a critical review and analysis of interacting surfaces, conformational … FA Baltoumas, MC Theodoropoulou, SJ Hamodrakas Journal of structural biology 182 (3), 209-218, 2013 | 103 | 2013 |
| gpDB: a database of GPCRs, G-proteins, effectors and their interactions MC Theodoropoulou, PG Bagos, IC Spyropoulos, SJ Hamodrakas Bioinformatics 24 (12), 1471-1472, 2008 | 44 | 2008 |
| GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques VP Satagopam, MC Theodoropoulou, CK Stampolakis, GA Pavlopoulos, ... Database 2010, baq019, 2010 | 35 | 2010 |
| Semi-supervised learning of Hidden Markov Models for biological sequence analysis IA Tamposis, KD Tsirigos, MC Theodoropoulou, PI Kontou, PG Bagos Bioinformatics 35 (13), 2208-2215, 2019 | 32 | 2019 |
| Molecular dynamics simulations and structure-based network analysis reveal structural and functional aspects of G-protein coupled receptor dimer interactions FA Baltoumas, MC Theodoropoulou, SJ Hamodrakas Journal of computer-aided molecular design 30, 489-512, 2016 | 28 | 2016 |
| Alternative Splicing Detection Tool—a novel PERL algorithm for sensitive detection of splicing events, based on next-generation sequencing data analysis PG Adamopoulos, MC Theodoropoulou, A Scorilas Annals of Translational Medicine 6 (12), 2018 | 18 | 2018 |
| Extending hidden Markov models to allow conditioning on previous observations IA Tamposis, MC Theodoropoulou, KD Tsirigos, PG Bagos Journal of Bioinformatics and Computational Biology 16 (05), 1850019, 2018 | 12 | 2018 |
| OMPdb: a global hub of beta-barrel outer membrane proteins AF Roumia, KD Tsirigos, MC Theodoropoulou, IA Tamposis, ... Frontiers in bioinformatics 1, 646581, 2021 | 9 | 2021 |
| Healthspan improvement and anti-aggregation effects induced by a marine-derived structural proteasome activator MA Vasilopoulou, A Gioran, M Theodoropoulou, A Koutsaviti, V Roussis, ... Redox Biology 56, 102462, 2022 | 8 | 2022 |
| Hidden neural networks for transmembrane protein topology prediction IA Tamposis, D Sarantopoulou, MC Theodoropoulou, EA Stasi, PI Kontou, ... Computational and Structural Biotechnology Journal 19, 6090-6097, 2021 | 6 | 2021 |
| Landscape of eukaryotic transmembrane beta barrel proteins AF Roumia, MC Theodoropoulou, KD Tsirigos, H Nielsen, PG Bagos Journal of proteome research 19 (3), 1209-1221, 2020 | 6 | 2020 |
| JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis IA Tamposis, KD Tsirigos, MC Theodoropoulou, PI Kontou, GN Tsaousis, ... Bioinformatics 35 (24), 5309-5312, 2019 | 5 | 2019 |
| GprotPRED: Annotation of Gα, Gβ and Gγ subunits of G-proteins using profile Hidden Markov Models (pHMMs) and application to proteomes VD Kostiou, MC Theodoropoulou, SJ Hamodrakas Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1864 (5), 435-440, 2016 | 4 | 2016 |
| GPCRpipe: a pipeline for the detection of G-protein coupled receptors in proteomes M Theodoropoulou, G Tsaousis, Z Litou, P Bagos, S Hamodrakas Proceedings of the 21st annual international conference on Intelligent …, 2013 | 4 | 2013 |
| Viterbi training of Hidden Markov Models for labeled sequences MC Theodoropoulou, I Mintsopoulos, PG Bagos Joint 25th Annual International Conference on Intelligent Systems for …, 2017 | 3 | 2017 |
| Predicting Alpha Helical Transmembrane Proteins Using HMMs GN Tsaousis, MC Theodoropoulou, SJ Hamodrakas, PG Bagos Hidden Markov Models: Methods and Protocols, 63-82, 2017 | 3 | 2017 |
| The human GPCR signal transduction network P Kontou, A Pavlopoulou, N Dimou, M Theodoropoulou, G Braliou, ... Network Modeling Analysis in Health Informatics and Bioinformatics 10, 1-12, 2021 | 2 | 2021 |
| Computational Studies on Mitochondrial Transmembrane beta-barrel Proteins. AF Roumia, MC Theodoropoulou, PG Bagos IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL 55, S67-S68, 2019 | | 2019 |
| Computational studies on eukaryotic transmembrane β-barrel proteins AF Roumia, MC Theodoropoulou, KD Tsirigos, PG Bagos PeerJ Preprints, 2018 | | 2018 |
