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Ivan G. Costa
Ivan G. Costa
Professor, Institute of Computational Genomics, RWTH Aachen
Verified email at rwth-aachen.de - Homepage
Title
Cited by
Cited by
Year
Clustering cancer gene expression data: a comparative study
MCP De Souto, IG Costa, DSA de Araujo, TB Ludermir, A Schliep
BMC bioinformatics 9 (1), 1-14, 2008
4832008
Therapeutic inhibition of inflammatory monocyte recruitment reduces steatohepatitis and liver fibrosis
O Krenkel, T Puengel, O Govaere, AT Abdallah, JC Mossanen, ...
Hepatology 67 (4), 1270-1283, 2018
3422018
SARS-CoV-2 infects and replicates in cells of the human endocrine and exocrine pancreas
JA Müller, R Groß, C Conzelmann, J Krüger, U Merle, J Steinhart, T Weil, ...
Nature metabolism 3 (2), 149-165, 2021
3292021
Identification of transcription factor binding sites using ATAC-seq
Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa
Genome biology 20, 1-21, 2019
2652019
On the selection of appropriate distances for gene expression data clustering
PA Jaskowiak, RJGB Campello, IG Costa
BMC bioinformatics 15, 1-17, 2014
1842014
A multiple kernel learning algorithm for drug-target interaction prediction
ACA Nascimento, RBC Prudêncio, IG Costa
BMC bioinformatics 17, 1-16, 2016
1782016
Human pluripotent stem cell-derived acinar/ductal organoids generate human pancreas upon orthotopic transplantation and allow disease modelling
M Hohwieler, A Illing, PC Hermann, T Mayer, M Stockmann, L Perkhofer, ...
Gut 66 (3), 473-486, 2017
1712017
Analysis of computational footprinting methods for DNase sequencing experiments
EG Gusmao, M Allhoff, M Zenke, IG Costa
Nature methods 13 (4), 303-309, 2016
1412016
DNA methylation levels at individual age-associated CpG sites can be indicative for life expectancy
Q Lin, CI Weidner, IG Costa, RE Marioni, MRP Ferreira, IJ Deary, ...
Aging (Albany NY) 8 (2), 394, 2016
1402016
HMGB2 loss upon senescence entry disrupts genomic organization and induces CTCF clustering across cell types
A Zirkel, M Nikolic, K Sofiadis, JP Mallm, CA Brackley, H Gothe, ...
Molecular cell 70 (4), 730-744. e6, 2018
1342018
The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation
M Kalwa, S Hänzelmann, S Otto, CC Kuo, J Franzen, S Joussen, ...
Nucleic acids research 44 (22), 10631-10643, 2016
1282016
Surface topography guides morphology and spatial patterning of induced pluripotent stem cell colonies
G Abagnale, A Sechi, M Steger, Q Zhou, CC Kuo, G Aydin, C Schalla, ...
Stem cell reports 9 (2), 654-666, 2017
1262017
Impact of missing data imputation methods on gene expression clustering and classification
MCP De Souto, PA Jaskowiak, IG Costa
BMC bioinformatics 16 (1), 1-9, 2015
1172015
Deep learning-based clustering approaches for bioinformatics
MR Karim, O Beyan, A Zappa, IG Costa, D Rebholz-Schuhmann, ...
Briefings in Bioinformatics 22 (1), 393-415, 2021
1152021
Detection of RNA–DNA binding sites in long noncoding RNAs
CC Kuo, S Hänzelmann, N Sentürk Cetin, S Frank, B Zajzon, JP Derks, ...
Nucleic acids research 47 (6), e32-e32, 2019
1102019
Myeloid cells in liver and bone marrow acquire a functionally distinct inflammatory phenotype during obesity-related steatohepatitis
O Krenkel, J Hundertmark, AT Abdallah, M Kohlhepp, T Puengel, T Roth, ...
Gut 69 (3), 551-563, 2020
1092020
Ranking and selecting clustering algorithms using a meta-learning approach
MCP De Souto, RBC Prudencio, RGF Soares, DSA De Araujo, IG Costa, ...
2008 IEEE International Joint Conference on Neural Networks (IEEE World …, 2008
1032008
CLEVER: clique-enumerating variant finder
T Marschall, IG Costa, S Canzar, M Bauer, GW Klau, A Schliep, ...
Bioinformatics 28 (22), 2875-2882, 2012
1022012
Epigenetic age predictions based on buccal swabs are more precise in combination with cell type-specific DNA methylation signatures
M Eipel, F Mayer, T Arent, MRP Ferreira, C Birkhofer, U Gerstenmaier, ...
Aging (Albany NY) 8 (5), 1034, 2016
1012016
Analyzing gene expression time-courses
A Schliep, IG Costa, C Steinhoff, A Schonhuth
IEEE/ACM Transactions on computational biology and bioinformatics 2 (3), 179-193, 2005
982005
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