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Alfonso Valencia
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
168182012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
60482007
GENCODE: the reference human genome annotation for The ENCODE Project
J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ...
Genome research 22 (9), 1760-1774, 2012
52542012
Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia
XS Puente, M Pinyol, V Quesada, L Conde, GR Ordóñez, N Villamor, ...
Nature 475 (7354), 101-105, 2011
18902011
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1811*2020
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS Biology 9 (4), e1001046, 2011
14642011
Expanded encyclopaedias of DNA elements in the human and mouse genomes
Nature 583, 699–710, 2020
14122020
Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia
V Quesada, L Conde, N Villamor, GR Ordóñez, P Jares, L Bassaganyas, ...
Nature genetics 44 (1), 47-52, 2012
12502012
The allelic landscape of human blood cell trait variation and links to common complex disease
WJ Astle, H Elding, T Jiang, D Allen, D Ruklisa, AL Mann, D Mead, ...
Cell 167 (5), 1415-1429. e19, 2016
12022016
IntAct: an open source molecular interaction database
H Hermjakob, L Montecchi‐Palazzi, C Lewington, S Mudali, S Kerrien, ...
Nucleic acids research 32 (suppl_1), D452-D455, 2004
11922004
Correlated mutations and residue contacts in proteins
U Göbel, C Sander, R Schneider, A Valencia
Proteins: Structure, Function, and Bioinformatics 18 (4), 309-317, 1994
10791994
An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins.
P Bork, C Sander, A Valencia
Proceedings of the National Academy of Sciences 89 (16), 7290-7294, 1992
10731992
Non-coding recurrent mutations in chronic lymphocytic leukaemia
XS Puente, S Beà, R Valdés-Mas, N Villamor, J Gutiérrez-Abril, ...
Nature 526 (7574), 519-524, 2015
10092015
Distinct DNA methylomes of newborns and centenarians
H Heyn, N Li, HJ Ferreira, S Moran, DG Pisano, A Gomez, J Diez, ...
Proceedings of the National Academy of Sciences 109 (26), 10522-10527, 2012
8952012
A hierarchical unsupervised growing neural network for clustering gene expression patterns
J Herrero, A Valencia, J Dopazo
Bioinformatics 17 (2), 126-136, 2001
8132001
Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes
I Ezkurdia, D Juan, JM Rodriguez, A Frankish, M Diekhans, J Harrow, ...
Human molecular genetics 23 (22), 5866-5878, 2014
7742014
The ras protein family: evolutionary tree and role of conserved amino acids
A Valencia, P Chardin, A Wittinghofer, C Sander
Biochemistry 30 (19), 4637-4648, 1991
7611991
Correlated mutations contain information about protein-protein interaction
F Pazos, M Helmer-Citterich, G Ausiello, A Valencia
Journal of molecular biology 271 (4), 511-523, 1997
6771997
Genetic drivers of epigenetic and transcriptional variation in human immune cells
L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ...
Cell 167 (5), 1398-1414. e24, 2016
6682016
Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia
M Kulis, S Heath, M Bibikova, AC Queirós, A Navarro, G Clot, ...
Nature genetics 44 (11), 1236-1242, 2012
6672012
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