Joseph M Dale

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Peter D. KarpDirector of the Bioinformatics Research Group, SRI InternationalVerified email at ai.sri.com
Tomer AltmanSenior Bioinformaticist, Altman Analytics LLCVerified email at altmananalytics.com
Suzanne PaleySRI InternationalVerified email at ai.sri.com
Mario LatendresseSRI InternationalVerified email at sri.com
Ron CaspiSRI InternationalVerified email at sri.com
Lukas A. MuellerBoyce Thompson Institute for Plant ResearchVerified email at cornell.edu
Ian PaulsenProfessor, Macquarie UniversityVerified email at mq.edu.au
Aaron SpauldingSRI InternationalVerified email at ai.sri.com
Shiaulou YuanAssistant Professor of Medicine, Massachusetts General Hospital and Harvard Medical SchoolVerified email at mgh.harvard.edu
Luciana FerrerInstituto en Ciencias de la Computación (Computer Science Institute), UBA-CONICETVerified email at dc.uba.ar
Kimmen SjolanderProfessor of Bioengineering, University of California, BerkeleyVerified email at berkeley.edu

Joseph M Dale

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bioinformatics computational biology genomics systems biology machine learning


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Empirical analysis of transcriptional activity in the Arabidopsis genome K Yamada, J Lim, JM Dale, H Chen, P Shinn, CJ Palm, AM Southwick, ... Science 302 (5646), 842-846, 2003	1067	2003
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases R Caspi, T Altman, JM Dale, K Dreher, CA Fulcher, F Gilham, P Kaipa, ... Nucleic acids research 38 (suppl_1), D473-D479, 2010	609	2010
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology PD Karp, SM Paley, M Krummenacker, M Latendresse, JM Dale, TJ Lee, ... Briefings in bioinformatics 11 (1), 40-79, 2010	603	2010
Machine learning methods for metabolic pathway prediction JM Dale, L Popescu, PD Karp BMC bioinformatics 11, 1-14, 2010	214	2010
Identification of inhibitors of auxin transcriptional activation by means of chemical genetics in Arabidopsis JI Armstrong, S Yuan, JM Dale, VN Tanner, A Theologis Proceedings of the National Academy of Sciences 101 (41), 14978-14983, 2004	138	2004
A systematic study of genome context methods: calibration, normalization and combination L Ferrer, JM Dale, PD Karp BMC bioinformatics 11, 1-24, 2010	37	2010
Subfamily hmms in functional genomics D Brown, N Krishnamurthy, JM Dale, W Christopher, K Sjölander Biocomputing 2005, 322-333, 2005	23	2005
The Pathway Tools Software in 2009 PD Karp, SM Paley, M Krummenacker, M Latendresse, JM Dale, T Lee, ... S225–S232 p, 0	1
Multiple-species Network-based Protein Classification JM Dale University of California, Berkeley with the University of California, San …, 2008		2008

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