Simon Rogers

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Mark GirolamiUniversity of CambridgeVerified email at cam.ac.uk
Rainer BreitlingProfessor of Systems Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Roderick Murray-SmithProfessor of Computing Science, University of Glasgow, School of Computing ScienceVerified email at glasgow.ac.uk
Gerardo Aragon-CamarasaSchool of Computing Science, University of GlasgowVerified email at dcs.gla.ac.uk
Maurizio FilipponeAssociate Professor - Statistics Program, KAUSTVerified email at kaust.edu.sa
John WilliamsonSenior Lecturer, Computing Science, University of GlasgowVerified email at dcs.gla.ac.uk
Andrew RamsayResearch Assistant, School of Computing Science, University of GlasgowVerified email at glasgow.ac.uk
Daryl WeirAalto UniversityVerified email at aalto.fi
Faizuddin Mohd NoorUniversiti Kuala LumpurVerified email at unikl.edu.my
Ryan M. RifkinMIT, GoogleVerified email at mit.edu
Frank DondelingerDirector of Data Science, NBR Oncology, NovartisVerified email at novartis.com
Craig StewartResearch Assistant, University of DundeeVerified email at pipandcraig.com
Tamara PolajnarComputer Laboratory, University of Cambridge, UKVerified email at cam.ac.uk
Katrina WatersPacific Northwest National LaboratoryVerified email at pnnl.gov
Andris JankevicsBiomolecular Mass Spectrometry and Proteomics, Utrecht UniversityVerified email at uu.nl
Raya Khanin, PhDAssociate Laboratory Member, Memorial Sloan Kettering Cancer Center; Cofounder LifeNomeVerified email at cbio.mskcc.org
Daniel BuschekUniversity of BayreuthVerified email at uni-bayreuth.de
Markus LöchtefeldAalborg UniversityVerified email at create.aau.dk
Keith VertanenAssociate Professor, Michigan Technological UniversityVerified email at mtu.edu
Per Ola KristenssonProfessor of Interactive Systems Engineering, Department of Engineering, University of CambridgeVerified email at cam.ac.uk

Simon Rogers

Senior Lecturer, Computing Science, University of Glasgow

Verified email at glasgow.ac.uk

Machine Learning Computational Metabolomics Computational Biology


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Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020	961	2020
A first course in machine learning S Rogers, M Girolami Chapman and Hall/CRC, 2016	380	2016
Estimating dataset size requirements for classifying DNA microarray data S Mukherjee, P Tamayo, S Rogers, R Rifkin, A Engle, C Campbell, ... Journal of computational biology 10 (2), 119-142, 2003	369	2003
Topic modeling for untargeted substructure exploration in metabolomics JJJ van Der Hooft, J Wandy, MP Barrett, KEV Burgess, S Rogers Proceedings of the National Academy of Sciences 113 (48), 13738-13743, 2016	347	2016
MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools M Ernst, KB Kang, AM Caraballo-Rodríguez, LF Nothias, J Wandy, ... Metabolites 9 (7), 144, 2019	333	2019
Variational Bayesian multinomial probit regression with Gaussian process priors M Girolami, S Rogers Neural Computation 18 (8), 1790-1817, 2006	298	2006
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models S Rogers, M Girolami, W Kolch, KM Waters, T Liu, B Thrall, HS Wiley Bioinformatics 24 (24), 2894-2900, 2008	188	2008
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships F Huber, L Ridder, S Verhoeven, JH Spaaks, F Diblen, S Rogers, ... PLoS computational biology 17 (2), e1008724, 2021	156	2021
ODE parameter inference using adaptive gradient matching with Gaussian processes F Dondelinger, D Husmeier, S Rogers, M Filippone Artificial intelligence and statistics, 216-228, 2013	151	2013
A Bayesian regression approach to the inference of regulatory networks from gene expression data S Rogers, M Girolami Bioinformatics 21 (14), 3131-3137, 2005	138	2005
The latent process decomposition of cDNA microarray data sets S Rogers, M Girolami, C Campbell, R Breitling IEEE/ACM transactions on computational biology and bioinformatics 2 (2), 143-156, 2005	124	2005
Accurate garment surface analysis using an active stereo robot head with application to dual-arm flattening L Sun, G Aragon-Camarasa, S Rogers, JP Siebert 2015 IEEE international conference on robotics and automation (ICRA), 185-192, 2015	123	2015
Probabilistic assignment of formulas to mass peaks in metabolomics experiments S Rogers, RA Scheltema, M Girolami, R Breitling Bioinformatics 25 (4), 512-518, 2009	118	2009
A community resource for paired genomic and metabolomic data mining MA Schorn, S Verhoeven, L Ridder, F Huber, DD Acharya, AA Aksenov, ... Nature Chemical Biology 17 (4), 363-368, 2021	111	2021
Advances in decomposing complex metabolite mixtures using substructure-and network-based computational metabolomics approaches MA Beniddir, KB Kang, G Genta-Jouve, F Huber, S Rogers, ... Natural product reports 38 (11), 1967-1993, 2021	109	2021
Hierarchic Bayesian models for kernel learning M Girolami, S Rogers Proceedings of the 22nd international conference on Machine learning, 241-248, 2005	107	2005
Ms2lda. org: web-based topic modelling for substructure discovery in mass spectrometry J Wandy, Y Zhu, JJJ van der Hooft, R Daly, MP Barrett, S Rogers Bioinformatics 34 (2), 317-318, 2018	106	2018
A user-specific machine learning approach for improving touch accuracy on mobile devices D Weir, S Rogers, R Murray-Smith, M Löchtefeld Proceedings of the 25th annual ACM symposium on User interface software and …, 2012	105	2012
Wavelength-selective 1/spl times/4 switch for 128 WDM channels at 50 GHz spacing DM Marom, DT Neilson, DS Greywall, NR Basavanhally, PR Kolodner, ... Optical Fiber Communication Conference and Exhibit, FB7-FB7, 2002	102	2002
Uncertain text entry on mobile devices D Weir, H Pohl, S Rogers, K Vertanen, PO Kristensson Proceedings of the SIGCHI conference on human factors in computing systems …, 2014	98	2014

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