| Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115-121, 2015 | 3645 | 2015 |
| Detecting differential usage of exons from RNA-seq data S Anders*, A Reyes*, W Huber Genome Research, 2012 | 1791 | 2012 |
| Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis N Cabezas-Wallscheid*, D Klimmeck*, J Hansson*, DB Lipka*, A Reyes*, ... Cell stem cell 15 (4), 507-522, 2014 | 606 | 2014 |
| Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements K Zarnack*, J König*, M Tajnik, I Martincorena, S Eustermann, I Stévant, ... Cell 152 (3), 453-466, 2013 | 505 | 2013 |
| A practical guide to methods controlling false discoveries in computational biology K Korthauer*, PK Kimes*, C Duvallet, A Reyes, A Subramanian, M Teng, ... Genome Biology 20 (1), 118, 2019 | 335 | 2019 |
| Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues A Reyes*, W Huber* Nucleic acids research 46 (2), 582-592, 2018 | 272 | 2018 |
| Myc depletion induces a pluripotent dormant state mimicking diapause R Scognamiglio, N Cabezas-Wallscheid, MC Thier, S Altamura, A Reyes, ... Cell 164 (4), 668-680, 2016 | 272 | 2016 |
| Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer SE Johnstone*, A Reyes*, Y Qi, C Adriaens, E Hegazi, K Pelka, JH Chen, ... Cell, 2020 | 171 | 2020 |
| Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells P Brennecke*, A Reyes*, S Pinto*, K Rattay*, M Nguyen, R Küchler, ... Nature Immunology, 2015 | 170 | 2015 |
| Drift and conservation of differential exon usage across tissues in primate species A Reyes*, S Anders*, RJ Weatheritt, TJ Gibson, LM Steinmetz, W Huber Proceedings of the National Academy of Sciences 110 (38), 15377-15382, 2013 | 139 | 2013 |
| Personal receptor repertoires: olfaction as a model. LD Olender T, Waszak SM, Viavant M, Khen M, Ben-Asher BMC Genomics, 2012 | 111 | 2012 |
| CTCF-mediated chromatin loops between promoter and gene body regulate alternative splicing across individuals M Ruiz-Velasco, M Kumar, MC Lai, P Bhat, AB Solis-Pinson, A Reyes, ... Cell systems 5 (6), 628-637. e6, 2017 | 104 | 2017 |
| An orally available, brain penetrant, small molecule lowers huntingtin levels by enhancing pseudoexon inclusion CG Keller, Y Shin, AM Monteys, N Renaud, M Beibel, N Teider, T Peters, ... Nature Communications 13 (1), 1150, 2022 | 88 | 2022 |
| RNA sequencing identifies novel non-coding RNA and exon-specific effects associated with cigarette smoking MM Parker, RP Chase, A Lamb, A Reyes, A Saferali, JH Yun, BE Himes, ... BMC Medical Genomics 10 (1), 58, 2017 | 60 | 2017 |
| Data-driven polymer model for mechanistic exploration of diploid genome organization Y Qi, A Reyes, SE Johnstone, MJ Aryee, BE Bernstein, B Zhang Biophysical Journal 119 (9), 1905-1916, 2020 | 52 | 2020 |
| Transcriptome-wide profiling and posttranscriptional analysis of hematopoietic stem/progenitor cell differentiation toward myeloid commitment D Klimmeck*, N Cabezas-Wallscheid*, A Reyes*, L von Paleske, ... Stem cell reports 3 (5), 858-875, 2014 | 40 | 2014 |
| A molecular glue degrader of the WIZ transcription factor for fetal hemoglobin induction PY Ting, S Borikar, JR Kerrigan, NM Thomsen, E Aghania, AE Hinman, ... Science 385 (6704), 91-99, 2024 | 12 | 2024 |
| Reproducible and replicable comparisons using SummarizedBenchmark PK Kimes*, A Reyes* Bioinformatics, 2019 | 12 | 2019 |
| Programmatic access to bacterial regulatory networks with regutools J Chávez*, C Barberena-Jonas*, JE Sotelo-Fonseca*, ... Bioinformatics, btaa575, 2020 | 5 | 2020 |
| Benchmarking tools for transcription factor prioritization LS Santana, A Reyes, S Hoersch, E Ferrero, C Kolter, S Gaulis, ... Computational and Structural Biotechnology Journal 23, 2190-2199, 2024 | 4 | 2024 |
Wolfgang HuberEMBL - European Molecular Biology LaboratoryVerified email at embl.org
