Philipp Drewe-Boss
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Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ...
Cell 158 (6), 1431-1443, 2014
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ...
Nature 477 (7365), 419-423, 2011
RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer
AL Wolfe, K Singh, Y Zhong, P Drewe, VK Rajasekhar, VR Sanghvi, ...
Nature 513 (7516), 65-70, 2014
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, FP Casale, ...
ELife 4, e05255, 2015
Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome
G Drechsel, A Kahles, AK Kesarwani, E Stauffer, J Behr, P Drewe, ...
The Plant Cell 25 (10), 3726-3742, 2013
RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints
Y Zhong, T Karaletsos, P Drewe, VT Sreedharan, D Kuo, K Singh, ...
Bioinformatics 33 (1), 139-141, 2017
Determinants of robustness in spindle assembly checkpoint signalling
S Heinrich, EM Geissen, J Kamenz, S Trautmann, C Widmer, P Drewe, ...
Nature cell biology 15 (11), 1328-1339, 2013
Alternative splicing substantially diversifies the transcriptome during early photomorphogenesis and correlates with the energy availability in arabidopsis
L Hartmann, P Drewe-Boß, T Wießner, G Wagner, S Geue, HC Lee, ...
The Plant Cell 28 (11), 2715-2734, 2016
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
J Behr, A Kahles, Y Zhong, VT Sreedharan, P Drewe, G Rätsch
Bioinformatics 29 (20), 2529-2538, 2013
Accurate detection of differential RNA processing
P Drewe, O Stegle, L Hartmann, A Kahles, R Bohnert, A Wachter, ...
Nucleic acids research 41 (10), 5189-5198, 2013
Spatio-temporal mRNA tracking in the early zebrafish embryo
K Holler, A Neuschulz, P Drewe-Boß, J Mintcheva, B Spanjaard, R Arsiè, ...
Nature communications 12 (1), 1-13, 2021
Statistical tests for detecting differential RNA-transcript expression from read counts
O Stegle, P Drewe, R Bohnert, K Borgwardt, G Rätsch
Nat Precedings, 2010
omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data
P Drewe-Boss, HH Wessels, U Ohler
Genome Biology 19 (1), 183, 2018
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ...
Bioinformatics 30 (9), 1300-1301, 2014
Deep learning for prediction of population health costs
P Drewe-Boss, D Enders, J Walker, U Ohler
BMC Medical Informatics and Decision Making 22 (1), 1-10, 2022
Cseq-simulator: a data simulator for CLIP-Seq experiments
W Kassuhn, U Ohler, P Drewe
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 21, 433, 2016
Using gradient boosting with stability selection on health insurance claims data to identify disease trajectories in chronic obstructive pulmonary disease
T Ploner, S Heß, M Grum, P Drewe-Boss, J Walker
Statistical Methods in Medical Research 29 (12), 3684-3694, 2020
Expanding the map of protein-RNA interaction sites via cell fusion followed by PAR-CLIP
F Hinze, P Drewe-Boss, M Milek, U Ohler, M Landthaler, M Gotthardt
RNA biology 15 (3), 359-368, 2018
SLM2 is a novel cardiac splicing factor involved in heart failure due to dilated cardiomyopathy
JN Boeckel, M Möbius-Winkler, M Müller, S Rebs, N Eger, L Schoppe, ...
Genomics, proteomics & bioinformatics, 2021
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data.
SJ Schultheiss, G Jean, J Behr, R Bohnert, P Drewe, N Görnitz, A Kahles, ...
BMC Bioinformatics 12 (S-11), A7, 2011
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