Oliver Kohlbacher

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Knut ReinertFU Berlin / MPI MolgenVerified email at fu-berlin.de
Timo SachsenbergStaff Scientist, University of TübingenVerified email at uni-tuebingen.de
Prof. Dr. Hans-Peter LenhofCenter for Bioinformatics, Saarland Informatics CampusVerified email at bioinf.uni-sb.de
Andreas HildebrandtProfessor für Bioinformatik und Software Engineering, Johannes Gutenberg Universität MainzVerified email at uni-mainz.de
Christian G. HuberInnsbruck or Saarbrücken or SalzburgVerified email at plus.ac.at
Nico Pfeiferfull Professor @ University of TübingenVerified email at mpi-inf.mpg.de
Sandra GesingExecutive Director at the US Research Software Engineers AssociationVerified email at us-rse.org
Jens KrügerUniversity of TübingenVerified email at uni-tuebingen.de
Michael ZillerPrincipal Investigator, Max Planck Institute of PsychiatryVerified email at psych.mpg.de
Charlotta ScharfePrincipal Data Scientist, F. Hoffmann-La Roche, SwitzerlandVerified email at roche.com
Nora C ToussaintSenior Bioinformatics Scientist, NEXUS, Swiss Federal Institute of Technologies (ETH) ZurichVerified email at nexus.ethz.ch
Benjamin SchubertGroup Leader, ICB@Helmholtz Center MunichVerified email at helmholtz-muenchen.de
Henning HermjakobHead of Molecular Systems, European Bioinformatics Institute (EMBL-EBI)Verified email at ebi.ac.uk
Richard GrunzkeTechnische Universität Dresden, Center for Information Services and High Performance ComputingVerified email at tu-dresden.de
Juan Antonio VizcainoProteomics Team Leader, EMBL-EBIVerified email at ebi.ac.uk
Sonja Herres-PawlisProfessor für Bioanorganische Chemie, RWTH Aachen UniversityVerified email at cup.uni-muenchen.de
André BrinkmannProfessor of Computer Science, Johannes Gutenberg University MainzVerified email at uni-mainz.de
Michael KaufmannProfessor of Computer Science, Tübingen UniversityVerified email at informatik.uni-tuebingen.de
Yasset Perez-RiverolTeam Coordinator, Proteomics Resources, EMBL-EBI, UKVerified email at ebi.ac.uk
Martin EisenacherMedizinische Bioinformatik, Medizinisches Proteom-Center, Ruhr-University BochumVerified email at rub.de

Oliver Kohlbacher

Professor for Applied Bioinformatics, University of Tübingen

Verified email at uni-tuebingen.de - Homepage

Bioinformatics Computational Biology Medical Informatics Immunoinformatics Proteomics


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Charting a dynamic DNA methylation landscape of the human genome MJ Ziller, H Gu, F Müller, J Donaghey, LTY Tsai, O Kohlbacher, ... Nature 500 (7463), 477-481, 2013	1361	2013
OpenMS–an open-source software framework for mass spectrometry M Sturm, A Bertsch, C Gröpl, A Hildebrandt, R Hussong, E Lange, ... BMC bioinformatics 9 (1), 1-11, 2008	1317	2008
Severe COVID-19 is marked by a dysregulated myeloid cell compartment J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ... Cell 182 (6), 1419-1440. e23, 2020	1155	2020
Visualization of omics data for systems biology N Gehlenborg, SI O'donoghue, NS Baliga, A Goesmann, MA Hibbs, ... Nature methods 7 (Suppl 3), S56-S68, 2010	706	2010
Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020	687	2020
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity M Röttig, MH Medema, K Blin, T Weber, C Rausch, O Kohlbacher Nucleic acids research 39 (suppl_2), W362-W367, 2011	680	2011
Comprehensive analysis of alternative splicing across tumors from 8,705 patients A Kahles, KV Lehmann, NC Toussaint, M Hüser, SG Stark, ... Cancer cell 34 (2), 211-224. e6, 2018	639	2018
OptiType: precision HLA typing from next-generation sequencing data A Szolek, B Schubert, C Mohr, M Sturm, M Feldhahn, O Kohlbacher Bioinformatics 30 (23), 3310-3316, 2014	601	2014
OpenMS: a flexible open-source software platform for mass spectrometry data analysis HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ... Nature methods 13 (9), 741-748, 2016	573	2016
SARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition A Nelde, T Bilich, JS Heitmann, Y Maringer, HR Salih, M Roerden, ... Nature immunology 22 (1), 74-85, 2021	539	2021
Sequence co-evolution gives 3D contacts and structures of protein complexes TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ... elife 3, e03430, 2014	510	2014
Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs) C Rausch, T Weber, O Kohlbacher, W Wohlleben, DH Huson Nucleic acids research 33 (18), 5799-5808, 2005	498	2005
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey, A Tsankov, ... Cell 153 (5), 1149-1163, 2013	471	2013
MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition A Höglund, P Dönnes, T Blum, HW Adolph, O Kohlbacher Bioinformatics 22 (10), 1158-1165, 2006	420	2006
From hype to reality: data science enabling personalized medicine H Fröhlich, R Balling, N Beerenwinkel, O Kohlbacher, S Kumar, ... BMC medicine 16 (1), 1-15, 2018	340	2018
TOPP—the OpenMS proteomics pipeline O Kohlbacher, K Reinert, C Gröpl, E Lange, N Pfeifer, O Schulz-Trieglaff, ... Bioinformatics 23 (2), e191-e197, 2007	339	2007
YLoc—an interpretable web server for predicting subcellular localization S Briesemeister, J Rahnenfï¿ ½hrer, O Kohlbacher Nucleic acids research 38 (suppl_2), W497-W502, 2010	328	2010
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction T Blum, S Briesemeister, O Kohlbacher BMC bioinformatics 10 (1), 1-11, 2009	321	2009
WIPI proteins: essential PtdIns3P effectors at the nascent autophagosome T Proikas-Cezanne, Z Takacs, P Dönnes, O Kohlbacher Journal of cell science 128 (2), 207-217, 2015	306	2015
Tools for label-free peptide quantification S Nahnsen, C Bielow, K Reinert, O Kohlbacher Molecular & Cellular Proteomics 12 (3), 549-556, 2013	292	2013

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