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Alisa Yurovsky
Alisa Yurovsky
Verified email at stonybrook.edu
Title
Cited by
Cited by
Year
Passive and active DNA methylation and the interplay with genetic variation in gene regulation
M Gutierrez-Arcelus, T Lappalainen, SB Montgomery, A Buil, H Ongen, ...
elife 2, e00523, 2013
4402013
Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription
H Kilpinen, SM Waszak, AR Gschwind, SK Raghav, RM Witwicki, A Orioli, ...
Science 342 (6159), 744-747, 2013
3822013
Measurement of average decoding rates of the 61 sense codons in vivo
J Gardin, R Yeasmin, A Yurovsky, Y Cai, S Skiena, B Futcher
Elife 3, e03735, 2014
2082014
Tissue-specific effects of genetic and epigenetic variation on gene regulation and splicing
M Gutierrez-Arcelus, H Ongen, T Lappalainen, SB Montgomery, A Buil, ...
PLoS genetics 11 (1), e1004958, 2015
2052015
Population variation and genetic control of modular chromatin architecture in humans
SM Waszak, O Delaneau, AR Gschwind, H Kilpinen, SK Raghav, ...
Cell 162 (5), 1039-1050, 2015
2032015
Large-scale recoding of an arbovirus genome to rebalance its insect versus mammalian preference
SH Shen, CB Stauft, O Gorbatsevych, Y Song, CB Ward, A Yurovsky, ...
Proceedings of the National Academy of Sciences 112 (15), 4749-4754, 2015
952015
Reply to Simmonds et al.: Codon pair and dinucleotide bias have not been functionally distinguished
B Futcher, O Gorbatsevych, SH Shen, CB Stauft, Y Song, B Wang, ...
Proceedings of the National Academy of Sciences 112 (28), E3635-E3636, 2015
242015
Re-annotation of 12,495 prokaryotic 16S rRNA 3’ends and analysis of Shine-Dalgarno and anti-Shine-Dalgarno sequences
MR Amin, A Yurovsky, Y Chen, S Skiena, B Futcher
PloS one 13 (8), e0202767, 2018
212018
Flurf, an automated flu virus reassortment finder based on phylogenetic trees
A Yurovsky, BME Moret
2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2010
202010
FluRF, an automated flu virus reassortment finder based on phylogenetic trees
A Yurovsky, BME Moret
Bioinformatics and Biomedicine (BIBM), 2010 IEEE International Conference, 2010
202010
Optimizing circuit layouts by configuring rooms for placing devices
P Gopalakrishnan, A Yurovsky
US Patent 7,665,054, 2010
192010
Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data
SM Waszak, H Kilpinen, AR Gschwind, A Orioli, SK Raghav, RM Witwicki, ...
Bioinformatics 30 (2), 165-171, 2014
152014
Prokaryotic coding regions have little if any specific depletion of Shine-Dalgarno motifs
A Yurovsky, MR Amin, J Gardin, Y Chen, S Skiena, B Futcher
PloS one 13 (8), e0202768, 2018
112018
Deepannotator: genome annotation with deep learning
MR Amin, A Yurovsky, Y Tian, S Skiena
Proceedings of the 2018 ACM international conference on bioinformatics …, 2018
102018
Registry for electronic design automation of integrated circuits
R Colwell, GSC Lamant, A Yurovsky, T Rosek
US Patent 7,945,890, 2011
82011
Pre-Phaser: Precise Cell-Cycle Phase Detector for scRNA-seq
A Yurovsky, B Futcher, S Skiena
Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019
12019
Modified protein encoding sequences having increased rare hexamer content
B Futcher, J Gardin, S Skiena, A Yurovsky, E Wimmer, S Mueller
US Patent App. 15/773,685, 2019
12019
Optimizing circuit layouts by configuring rooms for placing devices
P Gopalakrishnan, A Yurovsky
US Patent 8,527,928, 2013
12013
Statistical methodology for ribosomal frameshift detection
A Yurovsky, J Gardin, B Futcher, S Skiena
Proceedings of the 13th ACM International Conference on Bioinformatics …, 2022
2022
A Statistical Detector for Ribosomal Frameshifts and Dual Encodings based on Ribosome Profiling
A Yurovsky, J Gardin, B Futcher, S Skiena
bioRxiv, 2022
2022
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Articles 1–20