| Deep learning for reconstructing protein structures from cryo-EM density maps: recent advances and future directions N Giri, RS Roy, J Cheng Current Opinion in Structural Biology 79, 102536, 2023 | 26 | 2023 |
| Impact of AlphaFold on structure prediction of protein complexes: the CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023 | 16 | 2023 |
| Improving protein–ligand interaction modeling with cryo-em data, templates, and deep learning in 2021 ligand model challenge N Giri, J Cheng Biomolecules 13 (1), 132, 2023 | 11 | 2023 |
| High-performance deep learning toolbox for genome-scale prediction of protein structure and function M Gao, P Lund-Andersen, A Morehead, S Mahmud, C Chen, X Chen, ... 2021 IEEE/ACM Workshop on Machine Learning in High Performance Computing …, 2021 | 10 | 2021 |
| Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15 RS Roy, J Liu, N Giri, Z Guo, J Cheng Proteins: Structure, Function, and Bioinformatics 91 (12), 1889-1902, 2023 | 9 | 2023 |
| De Novo Atomic Protein Structure Modeling for Cryo-EM Density Maps Using 3D Transformer and Hidden Markov Model N Giri, J Cheng bioRxiv, 2024.01. 02.573943, 2024 | 4 | 2024 |
| Drlcomplex: Reconstruction of protein quaternary structures using deep reinforcement learning E Soltanikazemi, RS Roy, F Quadir, N Giri, A Morehead, J Cheng arXiv preprint arXiv:2205.13594, 2022 | 4 | 2022 |
| Cryo2StructData: A Large Labeled Cryo-EM Density Map Dataset for AI-based Modeling of Protein Structures N Giri, L Wang, J Cheng bioRxiv, 2023.06. 14.545024v2, 2024 | 1 | 2024 |
| Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge C Lawson, A Kryshtafovych, G Pintilie, S Burley, J Cerny, V Chen, ... Research Square, 2024 | | 2024 |
| Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge (preprint) C Lawson, A Kryshtafovych, G Pintilie, S Burley, J Cerny, V Chen, ... | | 2024 |
| Recommendation System Using Factorization Model and MapReduce Framework N Giri https://doi.org/10.5281/zenodo.6591586, 2020 | | 2020 |
| 2021 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments (MLHPC)| 978-1-6654-1124-0/21/$31.00© 2021 IEEE| DOI: 10.1109/MLHPC54614. 2021.00015 S Abraham, V Anantharaj, RS Assary, Y Babuji, J Balewski, J Balma, ... | | |
Jianlin ChengCurators' Distinguished Professor and Thompson Distinguished Professor, University of MissouriVerified email at missouri.edu
