Robert Jernigan

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Andrzej KloczkowskiProfessor of Pediatrics, The Ohio State University, Institute for Genomic Medicine, NCHVerified email at osu.edu
Ivet BaharDirector, Laufer Center for Physical & Quantitative Biology, Stony Brook UniversityVerified email at pitt.edu
Sanzo MiyazawaSee: https://orcid.org/0000-0002-5063-3661Verified email at sanzo.org
Michael T. ZimmermannAssistant Professor of Bioinformatics, Medical College of WisconsinVerified email at mcw.edu
Victor ZhurkinNCI, NIHVerified email at nih.gov
Drena DobbsUniversity Professor, Emerita, Genetics, Development & Cell Biology, Iowa State UniversityVerified email at iastate.edu
Taner SenResearch Scientist, USDA-ARS, GrainGenes / Adj. Prof., UC BerkeleyVerified email at usda.gov
Vasant G HonavarDorothy Foehr Huck and J. Lloyd Huck Chair in Biomedical Data Sciences and Artificial IntelligenceVerified email at psu.edu
Akinori SaraiProfessor, Kyushu Institute of TechnologyVerified email at sanzo.org
Pemra DorukerUniversity of Pittsburgh, Bogazici UniversityVerified email at pitt.edu
Kejue JiaMCDB, Yale UniversityVerified email at yale.edu
Ozlem KeskinChemical & Biological Engineering, Koc University, Istanbul TurkeyVerified email at ku.edu.tr
Ruth NussinovProfessor and Senior Principal Investigator, National Cancer Institute and Tel Aviv UniversityVerified email at post.tau.ac.il
Guang SongDepartment of Mathematics & Computer Science, Westmont CollegeVerified email at westmont.edu
Ali Rana AtilganProfessor at Sabanci University and Adjunct Professor at Bogazici University, Istanbul, TurkeyVerified email at sabanciuniv.edu
Andrzej KolinskiProfessor, University of WarsawVerified email at chem.uw.edu.pl
Lei YangResearch Scientist - Data Scientist, DuPont PioneerVerified email at ustc.edu
Kannan SankarBioinformatics Data Scientist at Novartis Institutes for Biomedical Research (NIBR)Verified email at novartis.com
Burak ErmanKoc UniversityVerified email at ku.edu.tr
Melik C. DemirelLloyd and Dorothy Huck Chair Professor in Biomimetic Materials and Director of CRAFT centerVerified email at psu.edu

Robert Jernigan

Curtiss Distinguished Professor in Biochemistry, Biophysics & Molecular Biology, Iowa State

Verified email at iastate.edu - Homepage

molecular calculations and simulations sequence comparisons


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Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation S Miyazawa, RL Jernigan Macromolecules 18 (3), 534-552, 1985	1998	1985
Anisotropy of fluctuation dynamics of proteins with an elastic network model AR Atilgan, SR Durell, RL Jernigan, MC Demirel, O Keskin, I Bahar Biophysical journal 80 (1), 505-515, 2001	1856	2001
Residue–residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading S Miyazawa, RL Jernigan Journal of molecular biology 256 (3), 623-644, 1996	1481	1996
Conformational energies of n-alkanes and the random configuration of higher homologs including polymethylene A Abe, RL Jernigan, PJ Flory Journal of the American Chemical Society 88 (4), 631-639, 1966	636	1966
A role for surface hydrophobicity in protein‐protein recognition L Young, RL Jernigan, DG Covell Protein Science 3 (5), 717-729, 1994	517	1994
Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation I Bahar, RL Jernigan Journal of molecular biology 266 (1), 195-214, 1997	362	1997
Structure-derived potentials and protein simulations RL Jernigan, I Bahar Current opinion in structural biology 6 (2), 195-209, 1996	345	1996
Global ribosome motions revealed with elastic network model Y Wang, AJ Rader, I Bahar, RL Jernigan Journal of structural biology 147 (3), 302-314, 2004	343	2004
Conformations of folded proteins in restricted spaces DG Covell, RL Jernigan Biochemistry 29 (13), 3287-3294, 1990	309	1990
Collective motions in HIV-1 reverse transcriptase: examination of flexibility and enzyme function I Bahar, B Erman, RL Jernigan, AR Atilgan, DG Covell Journal of molecular biology 285 (3), 1023-1037, 1999	282	1999
Protein elastic network models and the ranges of cooperativity L Yang, G Song, RL Jernigan Proceedings of the National Academy of Sciences 106 (30), 12347-12352, 2009	277	2009
Dynamics of large proteins through hierarchical levels of coarse‐grained structures P Doruker, RL Jernigan, I Bahar Journal of computational chemistry 23 (1), 119-127, 2002	277	2002
Crystal structures of the CusA efflux pump suggest methionine-mediated metal transport F Long, CC Su, MT Zimmermann, SE Boyken, KR Rajashankar, ... Nature 467 (7314), 484-488, 2010	269	2010
GOR V server for protein secondary structure prediction TZ Sen, RL Jernigan, J Garnier, A Kloczkowski Bioinformatics 21 (11), 2787-2788, 2005	261	2005
How well can we understand large-scale protein motions using normal modes of elastic network models? L Yang, G Song, RL Jernigan Biophysical journal 93 (3), 920-929, 2007	254	2007
Coagulation factors V and VIII and ceruloplasmin constitute a family of structurally related proteins. WR Church, RL Jernigan, J Toole, RM Hewick, J Knopf, GJ Knutson, ... Proceedings of the National Academy of Sciences 81 (22), 6934-6937, 1984	248	1984
Crystal structure of the CusBA heavy-metal efflux complex of Escherichia coli CC Su, F Long, MT Zimmermann, KR Rajashankar, RL Jernigan, EW Yu Nature 470 (7335), 558-562, 2011	245	2011
RNABindR: a server for analyzing and predicting RNA-binding sites in proteins M Terribilini, JD Sander, JH Lee, P Zaback, RL Jernigan, V Honavar, ... Nucleic acids research 35 (suppl_2), W578-W584, 2007	228	2007
Self‐consistent estimation of inter‐residue protein contact energies based on an equilibrium mixture approximation of residues S Miyazawa, RL Jernigan Proteins: Structure, Function, and Bioinformatics 34 (1), 49-68, 1999	228	1999
Efficient generation of feasible pathways for protein conformational transitions MK Kim, RL Jernigan, GS Chirikjian Biophysical journal 83 (3), 1620-1630, 2002	226	2002

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