Eli Levy Karin
Cited by
Cited by
MetaEuk–sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
E Levy Karin, M Mirdita, J Soeding
Microbiome, 2020
Fast and sensitive taxonomic assignment to metagenomic contigs
M Mirdita, M Steinegger, F Breitwieser, J Söding, E Levy Karin
Bioinformatics 37 (18), 3029-3031, 2021
SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts
R Zhang, M Mirdita, E Levy Karin, C Norroy, C Galiez, J Söding
Bioinformatics 37 (19), 3364-3366, 2021
An integrated model of phenotypic trait changes and site-specific sequence evolution.
E Levy Karin, S Wicke, T Pupko, I Mayrose
Systematic biology, 2017
CoPAP: Coevolution of Presence–Absence Patterns
O Cohen, H Ashkenazy, E Levy Karin, D Burstein, T Pupko
Nucleic acids research 41 (W1), W232-W237, 2013
Multiple sequence alignment averaging improves phylogeny reconstruction
H Ashkenazy, I Sela, E Levy Karin, G Landan, T Pupko
Systematic biology 68 (1), 117-130, 2019
Alignment errors strongly impact likelihood-based tests for comparing topologies
E Levy Karin, E Susko, T Pupko
Molecular biology and evolution 31 (11), 3057-3067, 2014
The Cytoskeleton of Parabasalian Parasites Comprises Proteins that Share Properties Common to Intermediate Filament Proteins
H Preisner, E Levy Karin, G Poschmann, K Stühler, T Pupko, SB Gould
Protist 167 (6), 526-543, 2016
The prevalence and evolutionary conservation of inverted repeats in proteobacteria
B Lavi, E Levy Karin, T Pupko, E Hazkani-Covo
Genome Biology and Evolution 10 (3), 918-927, 2018
Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to “Megavirales”
A Mushegian, E Levy Karin, T Pupko
Virology 513, 114-128, 2018
A simulation-based approach to statistical alignment
E Levy Karin, H Ashkenazy, J Hein, T Pupko
Systematic biology 68 (2), 252-266, 2019
Inferring rates and length-distributions of indels using approximate Bayesian computation.
E Levy Karin, D Shkedy, H Ashkenazy, RA Cartwright, T Pupko
Genome biology and evolution, 2017
A codon model for associating phenotypic traits with altered selective patterns of sequence evolution
K Halabi, E Levy Karin, L Guéguen, I Mayrose
Systematic Biology 70 (3), 608-622, 2021
TraitRateProp: a web server for the detection of trait-dependent evolutionary rate shifts in sequence sites
E Levy Karin, H Ashkenazy, S Wicke, T Pupko, I Mayrose
Nucleic Acids Research, 2017
Easy and accurate protein structure prediction using ColabFold
G Kim, S Lee, EL Karin, H Kim, Y Moriwaki, S Ovchinnikov, M Steinegger, ...
Inferring indel parameters using a simulation-based approach
E Levy Karin, A Rabin, H Ashkenazy, D Shkedy, O Avram, RA Cartwright, ...
Genome biology and evolution 7 (12), 3226-3238, 2015
Petabase-Scale Homology Search for Structure Prediction
S Lee, G Kim, E Levy Karin, M Mirdita, S Park, R Chikhi, A Babaian, ...
Cold Spring Harbor Perspectives in Biology, a041465, 2024
SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm
H Ashkenazy, E Levy Karin, Z Mertens, RA Cartwright, T Pupko
Nucleic Acids Research, 2017
RNA sequencing indicates widespread conservation of circadian clocks in marine zooplankton
V Raghavan, G Eichele, O Larink, E Levy Karin, J Söding
NAR Genomics and Bioinformatics 5 (1), lqad007, 2023
Rapid and Sensitive Protein Complex Alignment with Foldseek-Multimer
W Kim, M Mirdita, E Levy Karin, CLM Gilchrist, H Schweke, J Soeding, ...
bioRxiv, 2024.04. 14.589414, 2024
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