The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005 | 4134 | 2005 |
A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014 | 1777 | 2014 |
Genome-wide analysis of mammalian promoter architecture and evolution P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ... Nature genetics 38 (6), 626-635, 2006 | 1651 | 2006 |
The regulated retrotransposon transcriptome of mammalian cells GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, ... Nature genetics 41 (5), 563-571, 2009 | 911 | 2009 |
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009 | 422 | 2009 |
Unexpected expression of α-and β-globin in mesencephalic dopaminergic neurons and glial cells M Biagioli, M Pinto, D Cesselli, M Zaninello, D Lazarevic, P Roncaglia, ... Proceedings of the National Academy of Sciences 106 (36), 15454-15459, 2009 | 330 | 2009 |
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression P Batut, A Dobin, C Plessy, P Carninci, TR Gingeras Genome research 23 (1), 169-180, 2013 | 226 | 2013 |
Two independent transcription initiation codes overlap on vertebrate core promoters V Haberle, N Li, Y Hadzhiev, C Plessy, C Previti, C Nepal, J Gehrig, ... Nature 507 (7492), 381-385, 2014 | 202 | 2014 |
Multiple regulatory elements with spatially and temporally distinct activities control neurogenin1 expression in primary neurons of the zebrafish embryo P Blader, C Plessy, U Strähle Mechanisms of development 120 (2), 211-218, 2003 | 196 | 2003 |
Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan C Plessy, N Bertin, H Takahashi, R Simone, M Salimullah, T Lassmann, ... Nature methods 7 (7), 528-534, 2010 | 178 | 2010 |
The complexity of the mammalian transcriptome S Gustincich, A Sandelin, C Plessy, S Katayama, R Simone, D Lazarevic, ... The Journal of physiology 575 (2), 321-332, 2006 | 146 | 2006 |
RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions A Bonetti, F Agostini, AM Suzuki, K Hashimoto, G Pascarella, J Gimenez, ... Nature Communications 11 (1), 1018, 2020 | 135 | 2020 |
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance SS Atanur, I Birol, V Guryev, M Hirst, O Hummel, C Morrissey, ... Genome research 20 (6), 791-803, 2010 | 123 | 2010 |
C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution T Kouno, J Moody, ATJ Kwon, Y Shibayama, S Kato, Y Huang, M Böttcher, ... Nature communications 10 (1), 360, 2019 | 120 | 2019 |
Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes C Plessy, T Dickmeis, F Chalmel, U Strähle Trends in Genetics 21 (4), 207-210, 2005 | 92 | 2005 |
NanoCAGE: a high-resolution technique to discover and interrogate cell transcriptomes M Salimullah, S Mizuho, C Plessy, P Carninci Cold Spring Harbor Protocols 2011 (1), pdb. prot5559, 2011 | 85 | 2011 |
Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching DTP Tang, C Plessy, M Salimullah, AM Suzuki, R Calligaris, S Gustincich, ... Nucleic acids research 41 (3), e44-e44, 2013 | 83 | 2013 |
Conserved and acquired features of neurogenin1 regulation P Blader, CS Lam, S Rastegar, R Scardigli, JC Nicod, N Simplicio, ... Oxford University Press for The Company of Biologists Limited 131 (22), 5627 …, 2004 | 81 | 2004 |
Her5 acts as a prepattern factor that blocks neurogenin1 and coe2 expression upstream of Notch to inhibit neurogenesis at the midbrain-hindbrain boundary A Geling, C Plessy, S Rastegar, U Strähle, L Bally-Cuif Oxford University Press for The Company of Biologists Limited 131 (9), 1993-2006, 2004 | 71 | 2004 |
High-throughput verification of transcriptional starting sites by Deep-RACE S Olivarius, C Plessy, P Carninci Biotechniques 46 (2), 130-132, 2009 | 70 | 2009 |