| Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310-318, 2016 | 258 | 2016 |
| DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism A Sharifi-Zarchi, D Gerovska, K Adachi, M Totonchi, H Pezeshk, RJ Taft, ... BMC genomics 18, 1-21, 2017 | 141 | 2017 |
| A universal and robust integrated platform for the scalable production of human cardiomyocytes from pluripotent stem cells H Fonoudi, H Ansari, S Abbasalizadeh, MR Larijani, S Kiani, ... Stem cells translational medicine 4 (12), 1482-1494, 2015 | 128 | 2015 |
| Inhibition of TGFβ signaling promotes ground state pluripotency SN Hassani, M Totonchi, A Sharifi-Zarchi, S Mollamohammadi, M Pakzad, ... Stem Cell Reviews and Reports 10, 16-30, 2014 | 80 | 2014 |
| Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis E Karimizadeh, A Sharifi-Zarchi, H Nikaein, S Salehi, B Salamatian, ... BMC medical genomics 12, 1-12, 2019 | 58 | 2019 |
| Treatment of human embryonic stem cells with different combinations of priming and inducing factors toward definitive endoderm Y Tahamtani, M Azarnia, A Farrokhi, A Sharifi-Zarchi, N Aghdami, ... Stem cells and development 22 (9), 1419-1432, 2013 | 50 | 2013 |
| PIAS2-mediated blockade of IFN-β signaling: a basis for sporadic Parkinson disease dementia J Magalhaes, E Tresse, P Ejlerskov, E Hu, Y Liu, A Marin, A Montalant, ... Molecular psychiatry 26 (10), 6083-6099, 2021 | 49 | 2021 |
| Machine learning and network analysis of molecular dynamics trajectories reveal two chains of red/ox-specific residue interactions in human protein disulfide isomerase R Karamzadeh, MH Karimi-Jafari, A Sharifi-Zarchi, H Chitsaz, ... Scientific reports 7 (1), 3666, 2017 | 46 | 2017 |
| Small RNA sequencing reveals Dlk1-Dio3 locus-embedded microRNAs as major drivers of ground-state pluripotency S Moradi, A Sharifi-Zarchi, A Ahmadi, S Mollamohammadi, A Stubenvoll, ... Stem cell reports 9 (6), 2081-2096, 2017 | 42 | 2017 |
| DeePathology: deep multi-task learning for inferring molecular pathology from cancer transcriptome B Azarkhalili, A Saberi, H Chitsaz, A Sharifi-Zarchi Scientific reports 9 (1), 16526, 2019 | 38 | 2019 |
| Downregulation of extracellular matrix and cell adhesion molecules in cumulus cells of infertile polycystic ovary syndrome women with and without insulin resistance F Hassani, S Oryan, P Eftekhari-Yazdi, M Bazrgar, A Moini, N Nasiri, ... Cell Journal (Yakhteh) 21 (1), 35, 2019 | 37 | 2019 |
| Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians Y An, A Kawaguchi, C Zhao, A Toyoda, A Sharifi-Zarchi, SA Mousavi, ... Zoological letters 4, 1-12, 2018 | 37 | 2018 |
| Proteome analysis of ground state pluripotency S Taleahmad, M Mirzaei, LM Parker, SN Hassani, S Mollamohammadi, ... Scientific reports 5 (1), 17985, 2015 | 34 | 2015 |
| Whole genome sequencing of SARS-CoV2 strains circulating in Iran during five waves of pandemic J Yavarian, A Nejati, V Salimi, NZ Shafiei Jandaghi, K Sadeghi, A Abedi, ... PLoS One 17 (5), e0267847, 2022 | 33 | 2022 |
| Comparative in vitro evaluation of human dental pulp and follicle stem cell commitment R Karamzadeh, MB Eslaminejad, A Sharifi-Zarchi Cell Journal (Yakhteh) 18 (4), 609, 2016 | 28 | 2016 |
| StrongestPath: a Cytoscape application for protein–protein interaction analysis Z Mousavian, M Khodabandeh, A Sharifi-Zarchi, A Nadafian, A Mahmoudi BMC bioinformatics 22, 1-14, 2021 | 26 | 2021 |
| The assessment of efficient representation of drug features using deep learning for drug repositioning M Moridi, M Ghadirinia, A Sharifi-Zarchi, F Zare-Mirakabad BMC bioinformatics 20, 1-11, 2019 | 24 | 2019 |
| Genome-wide DNA methylation profiling in ectopic and eutopic of endometrial tissues N Barjaste, M Shahhoseini, P Afsharian, A Sharifi-Zarchi, ... Journal of Assisted Reproduction and Genetics 36, 1743-1752, 2019 | 22 | 2019 |
| Down-regulation of miR-200c and up-regulation of miR-30c target both stemness and metastasis genes in breast cancer M Rahimi, A Sharifi-Zarchi, N Zarghami, L Geranpayeh, M Ebrahimi, ... Cell Journal (Yakhteh) 21 (4), 467, 2020 | 21 | 2020 |
| Cell identity codes: understanding cell identity from gene expression profiles using deep neural networks F Abdolhosseini, B Azarkhalili, A Maazallahi, A Kamal, SA Motahari, ... Scientific reports 9 (1), 2342, 2019 | 21 | 2019 |
Hossein BaharvandRoyan instituteVerified email at royan-rc.ac.ir
