Rory Johnson

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Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Lawrence W. StantonQatar Biomedical Research InstituteVerified email at hbku.edu.qa
Carme ArnanCRGVerified email at crg.es
Marta MeléGroup Leader at Barcelona Supercomputing CenterVerified email at bsc.es
Dmitri PervouchineSkolkovo Institute for Science and TechnologyVerified email at skoltech.ru
Thierry PedrazziniUniversity of Lausanne Medical SchoolVerified email at chuv.ch
Michael SammethInstitute of Biophysics Carlos Chagas Filho (IBCCF), Federal University of Rio de Janeiro (UFRJ)Verified email at sammeth.net
Jean MonlongINSERM IRSD, Toulouse, FranceVerified email at inserm.fr
David S. DeLucaHannover Medical SchoolVerified email at mh-hannover.de
Adam FrankishManual Genome Annotation Coordinator, EMBL-EBIVerified email at ebi.ac.uk
Sarah DjebaliIRSD, INSERM U1220, ToulouseVerified email at inserm.fr
Pedro G. FerreiraDepartment of Computer Science, Faculty of Sciences University of Porto; INESC-TECVerified email at fc.up.pt
Andres LanzosBioMedical Data ScientistVerified email at runbox.com
Julien LagardeFlomics BiotechVerified email at flomics.com
Barbara Uszczynska-RatajczakIBCH PASVerified email at ibch.poznan.pl
Taisia PolidoriPostdoc at the Department for BioMedical Research (Bern, Switzerland).Verified email at dbmr.unibe.ch
Thomas GingerasProfessor of Functional Genomics, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Samir OunzainHAYA TherapeuticsVerified email at hayatx.com
Rudi MichelettiucsdVerified email at ucsd.edu
Michael AlexanianGladstone Institute of Cardiovascular DiseaseVerified email at gladstone.ucsf.edu

Rory Johnson

University College Dublin

Verified email at ucd.ie - Homepage

RNA Therapeutics Cancer CRISPR Long Noncoding RNA RNA Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012	17059	2012
Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012	5672	2012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012	5429	2012
GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2019	2784	2019
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020	1892*	2020
Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020	1356	2020
The human transcriptome across tissues and individuals M Melé, PG Ferreira, F Reverter, DS DeLuca, J Monlong, M Sammeth, ... Science 348 (6235), 660-665, 2015	1344	2015
GENCODE 2021 A Frankish, M Diekhans, I Jungreis, J Lagarde, JE Loveland, JM Mudge, ... Nucleic acids research 49 (D1), D916-D923, 2021	924	2021
Long non-coding RNAs: definitions, functions, challenges and recommendations JS Mattick, PP Amaral, P Carninci, S Carpenter, HY Chang, LL Chen, ... Nature reviews Molecular cell biology 24 (6), 430-447, 2023	778	2023
Human long non‐coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors SY Ng, R Johnson, LW Stanton The EMBO journal 31 (3), 522-533, 2012	622	2012
Towards a complete map of the human long non-coding RNA transcriptome B Uszczynska-Ratajczak, J Lagarde, A Frankish, R Guigó, R Johnson Nature Reviews Genetics 19 (9), 535-548, 2018	556	2018
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020	548	2020
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs H Tilgner, DG Knowles, R Johnson, CA Davis, S Chakrabortty, S Djebali, ... Genome research 22 (9), 1616-1625, 2012	539	2012
A microRNA-based gene dysregulation pathway in Huntington's disease R Johnson, C Zuccato, ND Belyaev, DJ Guest, E Cattaneo, NJ Buckley Neurobiology of disease 29 (3), 438-445, 2008	445	2008
Long non-coding RNAs in Huntington's disease neurodegeneration R Johnson Neurobiology of disease 46 (2), 245-254, 2012	440	2012
Genome-wide computational identification and manual annotation of human long noncoding RNA genes H Jia, M Osak, GK Bogu, LW Stanton, R Johnson, L Lipovich Rna 16 (8), 1478-1487, 2010	435	2010
The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs R Johnson, R Guigó Rna 20 (7), 959-976, 2014	325	2014
Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs S Ounzain, R Micheletti, T Beckmann, B Schroen, M Alexanian, I Pezzuto, ... European heart journal 36 (6), 353-368, 2015	294	2015
LncATLAS database for subcellular localization of long noncoding RNAs D Mas-Ponte, J Carlevaro-Fita, E Palumbo, TH Pulido, R Guigo, ... Rna 23 (7), 1080-1087, 2017	292	2017
Global positioning system: understanding long noncoding RNAs through subcellular localization J Carlevaro-Fita, R Johnson Molecular cell 73 (5), 869-883, 2019	282	2019

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