Sophia Tsoka

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Citations	7131	2774
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Christos Α. OuzounisAUTH, Thessalonica, Greece • CERTH, Thessalonica, GreeceVerified email at csd.auth.gr
Lazaros PapageorgiouProfessor of Chemical EngineeringVerified email at ucl.ac.uk
Sophia N KaragiannisProfessor of Translational Cancer Immunology and Immunotherapy, King’s College LondonVerified email at kcl.ac.uk
Ainali ChrysanthiDIGNOSIS Ltd, King's College LondonVerified email at dignosis.co
Debra Josephs MBChB, PhD, MRCPConsultant Medical OncologistVerified email at kcl.ac.uk
Songsong LiuHarbin Institute of Technology, ChinaVerified email at hit.edu.cn
Gareth MuirheadInstitute of Cancer ResearchVerified email at icr.ac.uk
Jonathan Cardoso-SilvaLondon School of Economics and Political ScienceVerified email at lse.ac.uk
Aristotelis KittasAristotle University of ThessalonikiVerified email at physics.auth.gr
Chris SanderHarvard Medical School, Broad Institute, MGH, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Christian Hundhausen, PhDHHU DüsseldorfVerified email at uni-duesseldorf.de
Caroline Moore-KochlacsBoston UniversityVerified email at bu.edu
STAVROS HAMODRAKASVerified email at biol.uoa.gr
Daniela De AngelisProfessor, Programme Leader at MRC Biostatistics Unit, University of CambridgeVerified email at mrc-bsu.cam.ac.uk
Russ B AltmanProfessor Stanford UniversityVerified email at stanford.edu
Iwei YehUniversity of California, San FranciscoVerified email at ucsf.edu
Tim D SpectorGuys and St Thomas Hospital NHS Trust, Kings College LondonVerified email at kcl.ac.uk
Paul Jaak JanssenSCK, Belgian Nuclear Research, University of Cape Town, Tufts University, University of GhentVerified email at telenet.be
pereira-leal jOphiomics - Precision MedicineVerified email at ophiomics.com
Ioannis IliopoulosProfessor Medical School University of CreteVerified email at med.uoc.gr

Sophia Tsoka

King's College London

Verified email at kcl.ac.uk

Bioinformatics


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Mapping cis- and trans-regulatory effects across multiple tissues in twins E Grundberg, KS Small, ÅK Hedman, AC Nica, A Buil, S Keildson, JT Bell, ... Nature genetics 44 (10), 1084-1089, 2012	893	2012
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes PD Karp, CA Ouzounis, C Moore-Kochlacs, L Goldovsky, P Kaipa, ... Nucleic acids research 33 (19), 6083-6089, 2005	773	2005
Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements E Grundberg, E Meduri, JK Sandling, ÅK Hedman, S Keildson, A Buil, ... The American Journal of Human Genetics 93 (5), 876-890, 2013	399	2013
Microbe-host interplay in atopic dermatitis and psoriasis N Fyhrquist, G Muirhead, S Prast-Nielsen, M Jeanmougin, P Olah, ... Nature communications 10 (1), 4703, 2019	314	2019
Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery I Yeh, T Hanekamp, S Tsoka, PD Karp, RB Altman Genome research 14 (5), 917-924, 2004	294	2004
The pruritus-and TH2-associated cytokine IL-31 promotes growth of sensory nerves M Feld, R Garcia, J Buddenkotte, S Katayama, K Lewis, G Muirhead, ... Journal of Allergy and Clinical Immunology 138 (2), 500-508. e24, 2016	269	2016
CAST: an iterative algorithm for the complexity analysis of sequence tracts VJ Promponas, AJ Enright, S Tsoka, DP Kreil, C Leroy, S Hamodrakas, ... Bioinformatics 16 (10), 915-922, 2000	215	2000
Modeling the percolation of annotation errors in a database of protein sequences WR Gilks, B Audit, D De Angelis, S Tsoka, CA Ouzounis Bioinformatics 18 (12), 1641-1649, 2002	212	2002
Genome evolution reveals biochemical networks and functional modules C Von Mering, EM Zdobnov, S Tsoka, FD Ciccarelli, JB Pereira-Leal, ... Proceedings of the National Academy of Sciences 100 (26), 15428-15433, 2003	195	2003
Differential methylation of the TRPA1 promoter in pain sensitivity JT Bell, AK Loomis, LM Butcher, F Gao, B Zhang, CL Hyde, J Sun, H Wu, ... Nature communications 5 (1), 2978, 2014	170	2014
Combined anti‐PD‐1 and anti‐CTLA‐4 checkpoint blockade: treatment of melanoma and immune mechanisms of action ZN Willsmore, BGT Coumbe, S Crescioli, S Reci, A Gupta, RJ Harris, ... European Journal of Immunology 51 (3), 544-556, 2021	162	2021
A regression tree approach using mathematical programming L Yang, S Liu, S Tsoka, LG Papageorgiou Expert Systems with Applications 78, 347-357, 2017	144	2017
The phylogenetic extent of metabolic enzymes and pathways JM Peregrin-Alvarez, S Tsoka, CA Ouzounis Genome research 13 (3), 422-427, 2003	136	2003
Mathematical programming for piecewise linear regression analysis L Yang, S Liu, S Tsoka, LG Papageorgiou Expert systems with applications 44, 156-167, 2016	132	2016
Link prediction methods and their accuracy for different social networks and network metrics F Gao, K Musial, C Cooper, S Tsoka Scientific programming 2015 (1), 172879, 2015	131	2015
Evaluation of annotation strategies using an entire genome sequence I Iliopoulos, S Tsoka, MA Andrade, AJ Enright, M Carroll, P Poullet, ... Bioinformatics 19 (6), 717-726, 2003	122	2003
Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants F Allum, X Shao, F Guénard, MM Simon, S Busche, M Caron, ... Nature communications 6 (1), 7211, 2015	121	2015
Chondroitin sulfate proteoglycan 4 and its potential as an antibody immunotherapy target across different tumor types KM Ilieva, A Cheung, S Mele, G Chiaruttini, S Crescioli, M Griffin, ... Frontiers in immunology 8, 1911, 2018	117	2018
Finding community structures in complex networks using mixed integer optimisation G Xu, S Tsoka, LG Papageorgiou The European Physical Journal B 60, 231-239, 2007	115	2007
Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion S Tsoka, CA Ouzounis Nature genetics 26 (2), 141-142, 2000	112	2000

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