| The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens D Repana, J Nulsen, L Dressler, M Bortolomeazzi, SK Venkata, A Tourna, ... Genome biology 20, 1-12, 2019 | 260 | 2019 |
| Immunogenomics of colorectal cancer response to checkpoint blockade: analysis of the KEYNOTE 177 trial and validation cohorts M Bortolomeazzi, MR Keddar, L Montorsi, A Acha-Sagredo, L Benedetti, ... Gastroenterology 161 (4), 1179-1193, 2021 | 72 | 2021 |
| Comparative assessment of genes driving cancer and somatic evolution in non-cancer tissues: an update of the Network of Cancer Genes (NCG) resource L Dressler, M Bortolomeazzi, MR Keddar, H Misetic, G Sartini, ... Genome biology 23 (1), 35, 2022 | 48 | 2022 |
| A survey of software tools for microRNA discovery and characterization using RNA-seq M Bortolomeazzi, E Gaffo, S Bortoluzzi Briefings in bioinformatics 20 (3), 918-930, 2019 | 27 | 2019 |
| A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially-resolved tissue phenotyping at single-cell resolution M Bortolomeazzi, L Montorsi, D Temelkovski, MR Keddar, ... Nature Communications 13 (1), 781, 2022 | 23 | 2022 |
| MiR&moRe2: a bioinformatics tool to characterize microRNAs and microRNA-offset RNAs from small RNA-Seq data E Gaffo, M Bortolomeazzi, A Bisognin, P Di Battista, F Lovisa, L Mussolin, ... International Journal of Molecular Sciences 21 (5), 1754, 2020 | 11 | 2020 |
| Identification of non-cancer cells from cancer transcriptomic data M Bortolomeazzi, MR Keddar, FD Ciccarelli, L Benedetti Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1863 (6), 194445, 2020 | 7 | 2020 |
| Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage DR Ghasemi, K Okonechnikov, A Rademacher, S Tirier, KK Maass, ... Nature Communications 15 (1), 269, 2024 | 5 | 2024 |
| Rarity: discovering rare cell populations from single-cell imaging data K Märtens, M Bortolomeazzi, L Montorsi, J Spencer, F Ciccarelli, C Yau Bioinformatics 39 (12), btad750, 2023 | 1 | 2023 |
| Comparative assessment of genes driving cancer and somatic evolution in noncancer tissues: an update of the NCG resource L Dressler, M Bortolomeazzi, MR Keddar, H Misetic, G Sartini, ... bioRxiv, 2021.08. 31.458177, 2021 | 1 | 2021 |
| Immunogenomic profile of colorectal cancer response to immune checkpoint blockade M Bortolomeazzi, MR Keddar, L Montorsi, A Acha-Sagredo, L Benedetti, ... bioRxiv, 2020.12. 15.422831, 2020 | 1 | 2020 |
| Comparison of spatial transcriptomics technologies used for tumor cryosections A Rademacher, A Huseynov, M Bortolomeazzi, SJ Wille, S Schumacher, ... bioRxiv, 2024.04. 03.586404, 2024 | | 2024 |
| Medulloblastoma oncogene aberrations are not involved in tumor initiation, but essential for disease progression and therapy resistance K Okonechnikov, P Joshi, V Koerber, A Rademacher, M Bortolomeazzi, ... bioRxiv, 2024.02. 09.579690, 2024 | | 2024 |
| Gene regulatory network landscape of Group 3/4 medulloblastoma P Joshi, T Stelzer, K Okonechnikov, I Sarropoulos, M Sepp, ... bioRxiv, 2024.02. 09.579680, 2024 | | 2024 |
| Highly-multiplexed imaging analysis of intra-tumour heterogeneity and response to immune checkpoint inhibitors in colorectal cancer M Bortolomeazzi King's College London, 2022 | | 2022 |
