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Paul Scherer
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Variational autoencoders for cancer data integration: design principles and computational practice
N Simidjievski, C Bodnar, I Tariq, P Scherer, HA Terre, Z Shams, ...
Frontiers in Genetics 10, 2019
792019
Pytorch geometric temporal: Spatiotemporal signal processing with neural machine learning models
B Rozemberczki, P Scherer, Y He, G Panagopoulos, A Riedel, ...
Proceedings of the 30th ACM International Conference on Information …, 2021
662021
Associations between maternal physical activity in early and late pregnancy and offspring birth size: remote federated individual level meta‐analysis from eight cohort studies
S Pastorino, T Bishop, SR Crozier, C Granström, K Kordas, LK Küpers, ...
BJOG: An International Journal of Obstetrics & Gynaecology 126 (4), 459-470, 2019
552019
Chickenpox Cases in Hungary: a Benchmark Dataset for Spatiotemporal Signal Processing with Graph Neural Networks
B Rozemberczki, P Scherer, O Kiss, R Sarkar, T Ferenci
WWW’21: Graph Learning Benchmarks Workshop, 2021
152021
REM: An integrative rule extraction methodology for explainable data analysis in healthcare
Z Shams, B Dimanov, S Kola, N Simidjievski, HA Terre, P Scherer, ...
medRxiv, 2021.01. 25.21250459, 2021
42021
Using ontology embeddings for structural inductive bias in gene expression data analysis
M Trębacz, Z Shams, M Jamnik, P Scherer, N Simidjievski, HA Terre, ...
15th Machine Learning in Computational Biology (MLCB'20), 2020
32020
Learning distributed representations of graphs with Geo2DR
P Scherer, P Lio
Graph Representation Learning and Beyond Workshop (ICML'20), 2020
32020
Unsupervised construction of computational graphs for gene expression data with explicit structural inductive biases
P Scherer, M Trębacz, N Simidjievski, R Vińas, Z Shams, HA Terre, ...
Bioinformatics 38 (5), 1320-1327, 2022
12022
Discrete Lagrangian Neural Networks with Automatic Symmetry Discovery
Y Lishkova, P Scherer, S Ridderbusch, M Jamnik, P Liň, S Ober-Blöbaum, ...
arXiv preprint arXiv:2211.10830, 2022
2022
Distributed representations of graphs for drug pair scoring
P Scherer, P Liň, M Jamnik
arXiv preprint arXiv:2209.09383, 2022
2022
PyRelationAL: A Library for Active Learning Research and Development
P Scherer, T Gaudelet, A Pouplin, J Soman, L Edwards, JP Taylor-King
arXiv preprint arXiv:2205.11117, 2022
2022
Incorporating network based protein complex discovery into automated model construction
P Scherer, M Trȩbacz, N Simidjievski, Z Shams, H Andres Terre, P Liň, ...
15th Machine Learning in Computational Biology (MLCB'20), 2020
2020
Decoupling feature propagation from the design of graph auto-encoders
P Scherer, H Andres-Terre, P Lio, M Jamnik
arXiv preprint arXiv:1910.08589, 2019
2019
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