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Ignacio J. Tripodi
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CATMoS: Collaborative acute toxicity modeling suite
K Mansouri, AL Karmaus, J Fitzpatrick, G Patlewicz, P Pradeep, D Alberga, ...
Environmental health perspectives 129 (4), 047013, 2021
712021
Knowledge-based biomedical data science
TJ Callahan, IJ Tripodi, H Pielke-Lombardo, LE Hunter
Annual review of biomedical data science 3, 23-41, 2020
532020
Detecting differential transcription factor activity from ATAC-Seq data
IJ Tripodi, MA Allen, RD Dowell
Molecules 23 (5), 1136, 2018
432018
Chromatin remodeling due to degradation of citrate carrier impairs osteogenesis of aged mesenchymal stem cells
A Pouikli, S Parekh, M Maleszewska, C Nikopoulou, M Baghdadi, I Tripodi, ...
Nature Aging 1 (9), 810-825, 2021
352021
Hypernetwork science: from multidimensional networks to computational topology
CA Joslyn, SG Aksoy, TJ Callahan, LE Hunter, B Jefferson, B Praggastis, ...
International conference on complex systems, 377-392, 2020
302020
A framework for automated construction of heterogeneous large-scale biomedical knowledge graphs
TJ Callahan, IJ Tripodi, LE Hunter, WA Baumgartner Jr
BioRxiv, 2020.04. 30.071407, 2020
242020
Applying knowledge-driven mechanistic inference to toxicogenomics
IJ Tripodi, TJ Callahan, JT Westfall, NS Meitzer, RD Dowell, LE Hunter
Toxicology in Vitro 66, 104877, 2020
162020
OWL-NETS: Transforming OWL representations for improved network inference
TJ Callahan, WA Baumgartner Jr, M Bada, AL Stefanski, I Tripodi, ...
PACIFIC SYMPOSIUM ON BIOCOMPUTING 2018: Proceedings of the Pacific Symposium …, 2018
152018
Knowledge-base-enriched relation extraction
LEH Ignacio Tripodi, Mayla Boguslav, Negacy Hailu
BioCreative VI Workshop Proceedings, 163-166, 2017
12*2017
A semantic knowledge-base approach to drug-drug interaction discovery
I Tripodi, KB Cohen, LE Hunter
2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017
82017
Nascent-Flow
IJ Tripodi, MA Gruca
42018
Deregulated mito-nuclear communication alters chromatin plasticity and differentiation potential of mesenchymal stem cells upon ageing
A Pouikli, S Parekh, M Maleszewska, M Baghdadi, I Tripodi, C Nikopoulou, ...
bioRxiv, 2020.04. 02.022293, 2020
32020
An open-source knowledge graph ecosystem for the life sciences
TJ Callahan, IJ Tripodi, AL Stefanski, L Cappelletti, SB Taneja, JM Wyrwa, ...
arXiv preprint arXiv:2307.05727, 2023
22023
Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data
IJ Tripodi, M Chowdhury, M Gruca, RD Dowell
Plos one 15 (4), e0232332, 2020
22020
ATAC-seq signal processing and recurrent neural networks can identify RNA polymerase activity
IJ Tripodi, M Chowdhury, R Dowell
BioRxiv, 531517, 2019
22019
An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter (ATACFlow)
IJ Tripodi, B Busby, S Tsang, J Zhao, E Floden, C Zhang
22018
Proceedings of a workshop to address animal methods bias in scientific publishing
C Krebs, C Camp, H Constantino, L Courtot, O Kavanagh, S Batista Leite, ...
ALTEX, 2022
12022
Setting the rhythm scene: deep learning-based drum loop generation from arbitrary language cues
IJ Tripodi
arXiv preprint arXiv:2209.10016, 2022
12022
Whole exome and transcript profiling of liver following aflatoxin B1 exposure in rats
JF Foley, B Elgart, D Phadke, D Mav, I Tripodi, N Clausen, M Weick, ...
Journal of Applied Toxicology, 2023
2023
A Tissue-Specific and Toxicology-Focused Knowledge Graph
IJ Tripodi, L Schmidt, BE Howard, D Mav, R Shah
Information 14 (2), 91, 2023
2023
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Articles 1–20