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Atul J. Butte
Atul J. Butte
Director, Bakar Computational Health Sciences Institute, University of California, San Francisco
Verified email at ucsf.edu - Homepage
Title
Cited by
Cited by
Year
xCell: digitally portraying the tissue cellular heterogeneity landscape
D Aran, Z Hu, AJ Butte
Genome biology 18, 1-14, 2017
30582017
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
D Aran, AP Looney, L Liu, E Wu, V Fong, A Hsu, S Chak, RP Naikawadi, ...
Nature immunology 20 (2), 163-172, 2019
27522019
The repertoire of mutational signatures in human cancer
LB Alexandrov, J Kim, NJ Haradhvala, MN Huang, AW Tian Ng, Y Wu, ...
Nature 578 (7793), 94-101, 2020
25462020
Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role of PGC1 and NRF1
ME Patti, AJ Butte, S Crunkhorn, K Cusi, R Berria, S Kashyap, Y Miyazaki, ...
Proceedings of the national academy of sciences 100 (14), 8466-8471, 2003
24192003
Scalable and accurate deep learning with electronic health records
A Rajkomar, E Oren, K Chen, AM Dai, N Hajaj, M Hardt, PJ Liu, X Liu, ...
NPJ digital medicine 1 (1), 1-10, 2018
21562018
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1774*2020
Ten years of pathway analysis: current approaches and outstanding challenges
P Khatri, M Sirota, AJ Butte
PLoS computational biology 8 (2), e1002375, 2012
17522012
Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements
AJ Butte, IS Kohane
Biocomputing 2000, 418-429, 1999
14031999
Personal omics profiling reveals dynamic molecular and medical phenotypes
R Chen, GI Mias, J Li-Pook-Than, L Jiang, HYK Lam, R Chen, E Miriami, ...
Cell 148 (6), 1293-1307, 2012
13782012
ClinGen--the Clinical Genome Resource
WMS Rehm HL, Berg JS, Brooks LD, Bustamante CD, Evans JP, Landrum MJ ...
New England Journal of Medicine 372 (23), 2235-42, 2015
11852015
Variation in the human immune system is largely driven by non-heritable influences
P Brodin, V Jojic, T Gao, S Bhattacharya, CJL Angel, D Furman, ...
Cell 160 (1), 37-47, 2015
10522015
Systematic pan-cancer analysis of tumour purity
D Aran, M Sirota, AJ Butte
Nature communications 6 (1), 8971, 2015
10412015
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
9032020
Discovery and preclinical validation of drug indications using compendia of public gene expression data
M Sirota, JT Dudley, J Kim, AP Chiang, AA Morgan, A Sweet-Cordero, ...
Science translational medicine 3 (96), 96ra77-96ra77, 2011
8752011
Clinical assessment incorporating a personal genome
EA Ashley, AJ Butte, MT Wheeler, R Chen, TE Klein, FE Dewey, ...
The Lancet 375 (9725), 1525-1535, 2010
8092010
Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
AJ Butte, P Tamayo, D Slonim, TR Golub, IS Kohane
Proceedings of the National Academy of Sciences 97 (22), 12182-12186, 2000
7932000
The use and analysis of microarray data
A Butte
Nature reviews drug discovery 1 (12), 951-960, 2002
7282002
Patterns of somatic structural variation in human cancer genomes
Y Li, ND Roberts, JA Wala, O Shapira, SE Schumacher, K Kumar, ...
Nature 578 (7793), 112-121, 2020
7222020
ImmPort: disseminating data to the public for the future of immunology
S Bhattacharya, S Andorf, L Gomes, P Dunn, H Schaefer, J Pontius, ...
Immunologic research 58, 234-239, 2014
6552014
Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease
JT Dudley, M Sirota, M Shenoy, RK Pai, S Roedder, AP Chiang, ...
Science translational medicine 3 (96), 96ra76-96ra76, 2011
6472011
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