| An integrated encyclopedia of DNA elements in the human genome. EP Consortium Nature 489 (7414), 57, 2012 | 17256 | 2012 |
| GENCODE: the reference human genome annotation for The ENCODE Project J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ... Genome research 22 (9), 1760-1774, 2012 | 5375 | 2012 |
| Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes I Ezkurdia, D Juan, JM Rodriguez, A Frankish, M Diekhans, J Harrow, ... Human molecular genetics 23 (22), 5866-5878, 2014 | 794 | 2014 |
| Structural bioinformatics J Gu, PE Bourne John Wiley & Sons, 2009 | 542 | 2009 |
| SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification M Tardaguila, L De La Fuente, C Marti, C Pereira, FJ Pardo-Palacios, ... Genome research 28 (3), 396-411, 2018 | 385 | 2018 |
| APPRIS: annotation of principal and alternative splice isoforms JM Rodriguez, P Maietta, I Ezkurdia, A Pietrelli, JJ Wesselink, G Lopez, ... Nucleic acids research 41 (D1), D110-D117, 2013 | 252 | 2013 |
| Progress and challenges in predicting protein–protein interaction sites I Ezkurdia, L Bartoli, P Fariselli, R Casadio, A Valencia, ML Tress Briefings in bioinformatics 10 (3), 233-246, 2009 | 218 | 2009 |
| Mechanism of super-assembly of respiratory complexes III and IV S Cogliati, E Calvo, M Loureiro, AM Guaras, R Nieto-Arellano, ... Nature 539 (7630), 579-582, 2016 | 209 | 2016 |
| Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts M Frenkel-Morgenstern, V Lacroix, I Ezkurdia, Y Levin, A Gabashvili, ... Genome research 22 (7), 1231-1242, 2012 | 174 | 2012 |
| Assessment of predictions submitted for the CASP6 comparative modeling category M Tress, I Ezkurdia, O Graña, G López, A Valencia Proteins: Structure, Function, and Bioinformatics 61 (S7), 27-45, 2005 | 164 | 2005 |
| Most highly expressed protein-coding genes have a single dominant isoform I Ezkurdia, JM Rodriguez, E Carrillo-de Santa Pau, J Vázquez, A Valencia, ... Journal of proteome research 14 (4), 1880-1887, 2015 | 131 | 2015 |
| Analyzing the first drafts of the human proteome I Ezkurdia, J Vázquez, A Valencia, M Tress Journal of proteome research 13 (8), 3854-3855, 2014 | 124 | 2014 |
| Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function I Ezkurdia, A del Pozo, A Frankish, JM Rodriguez, J Harrow, K Ashman, ... Molecular biology and evolution 29 (9), 2265-2283, 2012 | 104 | 2012 |
| Alternatively spliced homologous exons have ancient origins and are highly expressed at the protein level F Abascal, I Ezkurdia, J Rodriguez-Rivas, JM Rodriguez, A del Pozo, ... PLoS computational biology 11 (6), e1004325, 2015 | 95 | 2015 |
| Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8 I Ezkurdia, O Grana, JMG Izarzugaza, ML Tress Proteins: Structure, Function, and Bioinformatics 77 (S9), 196-209, 2009 | 81 | 2009 |
| Targeted proteome investigation via selected reaction monitoring mass spectrometry A Maiolica, MA Jünger, I Ezkurdia, R Aebersold Journal of proteomics 75 (12), 3495-3513, 2012 | 72 | 2012 |
| SanXoT: a modular and versatile package for the quantitative analysis of high-throughput proteomics experiments M Trevisan-Herraz, N Bagwan, F García-Marqués, JM Rodriguez, I Jorge, ... Bioinformatics 35 (9), 1594-1596, 2019 | 58 | 2019 |
| Assessment of predictions submitted for the CASP7 domain prediction category M Tress, J Cheng, P Baldi, K Joo, J Lee, JH Seo, J Lee, D Baker, ... Proteins: Structure, Function, and Bioinformatics 69 (S8), 137-151, 2007 | 56 | 2007 |
| Comprehensive quantification of the modified proteome reveals oxidative heart damage in mitochondrial heteroplasmy N Bagwan, E Bonzon-Kulichenko, E Calvo, AV Lechuga-Vieco, ... Cell Reports 23 (12), 3685-3697. e4, 2018 | 49 | 2018 |
| Quantitative HDL proteomics identifies peroxiredoxin-6 as a biomarker of human abdominal aortic aneurysm E Burillo, I Jorge, D Martínez-López, E Camafeita, LM Blanco-Colio, ... Scientific reports 6 (1), 38477, 2016 | 43 | 2016 |
