Elizabeth Ing-Simmons
Elizabeth Ing-Simmons
MRC London Institute of Medical Sciences
Verified email at
Cited by
Cited by
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
VC Seitan, AJ Faure, Y Zhan, RP McCord, BR Lajoie, E Ing-Simmons, ...
Genome research 23 (12), 2066-2077, 2013
Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation
S Cuartero, FD Weiss, G Dharmalingam, Y Guo, E Ing-Simmons, ...
Nature immunology 19 (9), 932-941, 2018
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
E Ing-Simmons, VC Seitan, AJ Faure, P Flicek, T Carroll, J Dekker, ...
Genome research 25 (4), 504-513, 2015
Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation
N Harmston, E Ing-Simmons, G Tan, M Perry, M Merkenschlager, ...
Nature communications 8 (1), 1-13, 2017
Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning
E Ing-Simmons, R Vaid, XY Bing, M Levine, M Mannervik, JM Vaquerizas
Nature Genetics 53 (4), 487-499, 2021
GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data
N Harmston, E Ing-Simmons, M Perry, A Barešić, B Lenhard
BMC Genomics 16 (1), 963, 2015
Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments
ATL Lun, M Perry, E Ing-Simmons
F1000Research 5, 2016
Emerging mechanisms and dynamics of three-dimensional genome organisation at zygotic genome activation
E Ing-Simmons, M Rigau, JM Vaquerizas
Current Opinion in Cell Biology 74, 37-46, 2022
Visualising three-dimensional genome organisation in two dimensions
E Ing-Simmons, JM Vaquerizas
Development 146 (19), dev177162, 2019
Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation
I Ferreirós-Vidal, T Carroll, T Zhang, V Lagani, RN Ramirez, ...
PLOS Biology 17 (4), e2006506, 2019
Early developmental plasticity enables the induction of an intermediate extraembryonic cell state
A Sathyanarayanan, E Ing-Simmons, R Chen, HW Jeong, HO Ozguldez, ...
Science Advances 8 (44), eabl9583, 2022
Ronin governs the metabolic capacity of the embryonic lineage for post‐implantation development
K Salewskij, T Gross‐Thebing, E Ing‐Simmons, B Duethorn, B Rieger, ...
EMBO reports 22 (11), e53048, 2021
Oncometabolite Tinkers with Genome Folding, Boosting Oncogene Expression
E Ing-Simmons, M Merkenschlager
Trends in molecular medicine 22 (3), 185-187, 2016
Doxorubicin Changes the Spatial Organization of the Genome around Active Promoters
ME Stefanova, E Ing-Simmons, S Stefanov, I Flyamer, H Dorado Garcia, ...
Cells 12 (15), 2001, 2023
Reply to: Revisiting the use of structural similarity index in Hi-C
E Ing-Simmons, N Machnik, JM Vaquerizas
Nature Genetics, 1-3, 2023
SSIM can robustly identify changes in 3D genome conformation maps
E Ing-Simmons, N Machnik, JM Vaquerizas
bioRxiv, 2021.10. 18.464422, 2021
The role of cohesin in long-range gene regulation
E Simmons
Imperial College London, 2017
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