John F. Ouyang
John F. Ouyang
Principal Research Scientist, Duke-NUS Medical School
Verified email at - Homepage
Cited by
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A single-cell atlas of entorhinal cortex from individuals with Alzheimer’s disease reveals cell-type-specific gene expression regulation
A Grubman, G Chew, JF Ouyang, G Sun, XY Choo, C McLean, ...
Nature neuroscience 22 (12), 2087-2097, 2019
Modelling human blastocysts by reprogramming fibroblasts into iBlastoids
X Liu, JP Tan, J Schröder, A Aberkane, JF Ouyang, M Mohenska, SM Lim, ...
Nature 591 (7851), 627-632, 2021
Transcriptional signature in microglia associated with Aβ plaque phagocytosis
A Grubman, XY Choo, G Chew, JF Ouyang, G Sun, NP Croft, FJ Rossello, ...
Nature communications 12 (1), 3015, 2021
Reprogramming roadmap reveals route to human induced trophoblast stem cells
X Liu, JF Ouyang, FJ Rossello, JP Tan, KC Davidson, DS Valdes, ...
Nature 586 (7827), 101-107, 2020
Functional annotation of human long noncoding RNAs via molecular phenotyping
JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ...
Genome research 30 (7), 1060-1072, 2020
ShinyCell: simple and sharable visualization of single-cell gene expression data
JF Ouyang, US Kamaraj, EY Cao, OJL Rackham
Bioinformatics 37 (19), 3374-3376, 2021
Combined fragmentation method: A simple method for fragmentation of large molecules
HA Le, HJ Tan, JF Ouyang, RPA Bettens
Journal of chemical theory and computation 8 (2), 469-478, 2012
deltaTE: detection of translationally regulated genes by integrative analysis of Ribo‐seq and RNA‐seq Data
S Chothani, E Adami, JF Ouyang, S Viswanathan, N Hubner, SA Cook, ...
Current protocols in molecular biology 129 (1), e108, 2019
Modelling water: A lifetime enigma
JF Ouyang, RPA Bettens
Chimia 69 (3), 104-104, 2015
Trouble with the many-body expansion
JF Ouyang, MW Cvitkovic, RPA Bettens
Journal of chemical theory and computation 10 (9), 3699-3707, 2014
A high-resolution map of human RNA translation
SP Chothani, E Adami, AA Widjaja, SR Langley, S Viswanathan, CJ Pua, ...
Molecular cell 82 (15), 2885-2899. e8, 2022
Many-body basis set superposition effect
JF Ouyang, RPA Bettens
Journal of chemical theory and computation 11 (11), 5132-5143, 2015
The MURAL collection of prostate cancer patient-derived xenografts enables discovery through preclinical models of uro-oncology
GP Risbridger, AK Clark, LH Porter, R Toivanen, A Bakshi, NL Lister, ...
Nature communications 12 (1), 5049, 2021
When are many-body effects significant?
JF Ouyang, RPA Bettens
Journal of chemical theory and computation 12 (12), 5860-5867, 2016
GeneSwitches: ordering gene expression and functional events in single-cell experiments
EY Cao, JF Ouyang, OJL Rackham
Bioinformatics 36 (10), 3273-3275, 2020
Transient naive reprogramming corrects hiPS cells functionally and epigenetically
S Buckberry, X Liu, D Poppe, JP Tan, G Sun, J Chen, TV Nguyen, ...
Nature 620 (7975), 863-872, 2023
Single cell analysis in head and neck cancer reveals potential immune evasion mechanisms during early metastasis
HS Quah, EY Cao, L Suteja, CH Li, HS Leong, FT Chong, S Gupta, ...
Nature Communications 14 (1), 1680, 2023
A single-cell atlas identifies pretreatment features of primary imatinib resistance in chronic myeloid leukemia
V Krishnan, F Schmidt, Z Nawaz, PN Venkatesh, KL Lee, X Ren, ZE Chan, ...
Blood, The Journal of the American Society of Hematology 141 (22), 2738-2755, 2023
EpiMogrify models H3K4me3 data to identify signaling molecules that improve cell fate control and maintenance
US Kamaraj, J Chen, K Katwadi, JF Ouyang, YBY Sun, YM Lim, X Liu, ...
Cell Systems 11 (5), 509-522. e10, 2020
Systems level identification of a matrisome-associated macrophage polarisation state in multi-organ fibrosis
JF Ouyang, K Mishra, Y Xie, H Park, KY Huang, E Petretto, J Behmoaras
Elife 12, e85530, 2023
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Articles 1–20