| A multimodal deep learning framework for predicting drug–drug interaction events Y Deng, X Xu, Y Qiu, J Xia, W Zhang, S Liu Bioinformatics 36 (15), 4316-4322, 2020 | 232 | 2020 |
| MVGCN: data integration through multi-view graph convolutional network for predicting links in biomedical bipartite networks H Fu, F Huang, X Liu, Y Qiu, W Zhang Bioinformatics 38 (2), 426-434, 2022 | 60 | 2022 |
| A comprehensive review of computational methods for drug-drug interaction detection Y Qiu, Y Zhang, Y Deng, S Liu, W Zhang IEEE/ACM transactions on computational biology and bioinformatics 19 (4 …, 2021 | 60 | 2021 |
| Predicting drug-drug interactions using multi-modal deep auto-encoders based network embedding and positive-unlabeled learning Y Zhang, Y Qiu, Y Cui, S Liu, W Zhang Methods 179, 37-46, 2020 | 55 | 2020 |
| Enhancing drug-drug interaction prediction using deep attention neural networks S Liu, Y Zhang, Y Cui, Y Qiu, Y Deng, Z Zhang, W Zhang IEEE/ACM transactions on computational biology and Bioinformatics 20 (2 …, 2022 | 49 | 2022 |
| META-DDIE: predicting drug–drug interaction events with few-shot learning Y Deng, Y Qiu, X Xu, S Liu, Z Zhang, S Zhu, W Zhang Briefings in Bioinformatics 23 (1), bbab514, 2022 | 31 | 2022 |
| Structural network embedding using multi-modal deep auto-encoders for predicting drug-drug interactions S Liu, Z Huang, Y Qiu, YPP Chen, W Zhang 2019 IEEE International conference on bioinformatics and biomedicine (BIBM …, 2019 | 27 | 2019 |
| Predicting drug-disease associations via multi-task learning based on collective matrix factorization F Huang, Y Qiu, Q Li, S Liu, F Ni Frontiers in bioengineering and biotechnology 8, 218, 2020 | 21 | 2020 |
| Graph embedding ensemble methods based on the heterogeneous network for lncRNA-miRNA interaction prediction C Zhao, Y Qiu, S Zhou, S Liu, W Zhang, Y Niu BMC genomics 21, 1-12, 2020 | 20 | 2020 |
| DSAE-Impute: Learning discriminative stacked autoencoders for imputing single-cell rna-seq data S Gan, H Deng, Y Qiu, M Alshahrani, S Liu Current Bioinformatics 17 (5), 440-451, 2022 | 5 | 2022 |
