Mikhail Ponomarenko
Mikhail Ponomarenko
Novosibirsk State University; Institute of Cytology and Genetics, Novosibirsk, Russia
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Cited by
Conformational and physicochemical DNA features specific for transcription factor binding sites.
JV Ponomarenko, MP Ponomarenko, AS Frolov, DG Vorobyev, ...
Bioinformatics (Oxford, England) 15 (7), 654-668, 1999
An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding …
L Savinkova, I Drachkova, T Arshinova, P Ponomarenko, M Ponomarenko, ...
PloS one 8 (2), e54626, 2013
TATA box polymorphisms in human gene promoters and associated hereditary pathologies
LK Savinkova, MP Ponomarenko, PM Ponomarenko, IA Drachkova, ...
Biochemistry (Moscow) 74, 117-129, 2009
Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.
MP Ponomarenko, JV Ponomarenko, AS Frolov, NL Podkolodny, ...
Bioinformatics (Oxford, England) 15 (7), 687-703, 1999
rSNP_Guide: An integrated database‐tools system for studying SNPs and site‐directed mutations in transcription factor binding sites
JV Ponomarenko, GV Orlova, TI Merkulova, EV Gorshkova, ON Fokin, ...
Human mutation 20 (4), 239-248, 2002
A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism
PM Ponomarenko, LK Savinkova, IA Drachkova, MV Lysova, ...
Doklady Biochemistry and Biophysics 419 (1), 88-92, 2008
Point mutations within 663–666 bp of intron 6 of the human TDO2 gene, associated with a number of psychiatric disorders, damage the YY-1 transcription factor binding site
GV Vasiliev, VM Merkulov, VF Kobzev, TI Merkulova, MP Ponomarenko, ...
FEBS letters 462 (1-2), 85-88, 1999
Oligonucleotide frequency matrices addressed to recognizing functional DNA sites.
MP Ponomarenko, JV Ponomarenko, AS Frolov, OA Podkolodnaya, ...
Bioinformatics (Oxford, England) 15 (7), 631-643, 1999
The Mechanism by which TATA‐Box Polymorphisms Associated with Human Hereditary Diseases Influence Interactions with the TATA‐Binding Protein
I Drachkova, L Savinkova, T Arshinova, M Ponomarenko, S Peltek, ...
Human Mutation 35 (5), 601-608, 2014
rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations
JV Ponomarenko, TI Merkulova, GV Vasiliev, ZB Levashova, GV Orlova, ...
Nucleic Acids Research 29 (1), 312-316, 2001
How to Use SNP_TATA_Comparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene’s Promoter via a Change in Affinity of the TATA‐Binding …
M Ponomarenko, D Rasskazov, O Arkova, P Ponomarenko, V Suslov, ...
BioMed Research International 2015 (1), 359835, 2015
SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites
AE Kel, MP Ponomarenko, EA Likhachev, YL Orlov, IV Ischenko, ...
Bioinformatics 9 (6), 617-627, 1993
Nucleosomal DNA property database.
VG Levitsky, MP Ponomarenko, JV Ponomarenko, AS Frolov, ...
Bioinformatics (Oxford, England) 15 (7), 582-592, 1999
GenViewer: a computing tool for protein-coding regions prediction in nucleotide sequences
L Milanesi, NA Kolchanov, IB Rogozin, IV Ischenko, AE Kel, YL Orlov, ...
Bioinformatics, Supercomputing and Complex Genome Analysis, 573-587, 1993
ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another
JV Ponomarenko, DP Furman, AS Frolov, NL Podkolodny, GV Orlova, ...
Nucleic Acids Research 29 (1), 284-287, 2001
SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data
JV Ponomarenko, GV Orlova, AS Frolov, MS Gelfand, MP Ponomarenko
Nucleic Acids Research 30 (1), 195-199, 2002
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro
VP Valuev, DA Afonnikov, MP Ponomarenko, L Milanesi, NA Kolchanov
Nucleic Acids Research 30 (1), 200-202, 2002
Generating programs for predicting the activity of functional sites
MP Ponomarenko, AN Kolchanova, NA Kolchanov
Journal of Computational Biology 4 (1), 83-90, 1997
Hogness box
M Ponomarenko, V Mironova, K Gunbin, L Savinkova
Brenner’s Encyclopedia of Genetics 3, 491-494, 2013
Obesity-related known and candidate SNP markers can significantly change affinity of TATA-binding protein for human gene promoters
OV Arkova, MP Ponomarenko, DA Rasskazov, IA Drachkova, ...
BMC genomics 16, 1-13, 2015
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