Kiran Raosaheb Patil
Kiran Raosaheb Patil
MRC Toxicology Unit, University of Cambridge
Verified email at - Homepage
Cited by
Cited by
Extensive impact of non-antibiotic drugs on human gut bacteria
L Maier, M Pruteanu, M Kuhn, G Zeller, A Telzerow, EE Anderson, ...
Nature 555 (7698), 623-628, 2018
Towards standards for human fecal sample processing in metagenomic studies
PI Costea, G Zeller, S Sunagawa, E Pelletier, A Alberti, F Levenez, ...
Nature biotechnology 35 (11), 1069-1076, 2017
Uncovering transcriptional regulation of metabolism by using metabolic network topology
KR Patil, J Nielsen
Proceedings of the national academy of sciences 102 (8), 2685-2689, 2005
Metabolic dependencies drive species co-occurrence in diverse microbial communities
A Zelezniak, S Andrejev, O Ponomarova, DR Mende, P Bork, KR Patil
Proceedings of the National Academy of Sciences 112 (20), 6449-6454, 2015
Evolutionary programming as a platform for in silico metabolic engineering
KR Patil, I Rocha, J Förster, J Nielsen
BMC bioinformatics 6, 1-12, 2005
OptFlux: an open-source software platform for in silico metabolic engineering
I Rocha, P Maia, P Evangelista, P Vilaça, S Soares, JP Pinto, J Nielsen, ...
BMC systems biology 4, 1-12, 2010
Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
D Machado, S Andrejev, M Tramontano, KR Patil
Nucleic acids research 46 (15), 7542-7553, 2018
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
The metabolic response of heterotrophic Arabidopsis cells to oxidative stress
CJ Baxter, H Redestig, N Schauer, D Repsilber, KR Patil, J Nielsen, ...
Plant physiology 143 (1), 312-325, 2007
Improved vanillin production in baker's yeast through in silico design
AR Brochado, C Matos, BL Mřller, J Hansen, UH Mortensen, KR Patil
Microbial cell factories 9, 1-15, 2010
Yeast creates a niche for symbiotic lactic acid bacteria through nitrogen overflow
O Ponomarova, N Gabrielli, DC Sévin, M Mülleder, K Zirngibl, K Bulyha, ...
Cell systems 5 (4), 345-357. e6, 2017
Metabolic interactions in microbial communities: untangling the Gordian knot
O Ponomarova, KR Patil
Current opinion in microbiology 27, 37-44, 2015
Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering
MA Asadollahi, J Maury, KR Patil, M Schalk, A Clark, J Nielsen
Metabolic engineering 11 (6), 328-334, 2009
Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies
M Tramontano, S Andrejev, M Pruteanu, M Klünemann, M Kuhn, ...
Nature microbiology 3 (4), 514-522, 2018
Industrial Systems Biology of Saccharomyces cerevisiae Enables Novel Succinic Acid Cell Factory
JM Otero, D Cimini, KR Patil, SG Poulsen, L Olsson, J Nielsen
PloS one 8 (1), e54144, 2013
Use of genome-scale microbial models for metabolic engineering
KR Patil, M Ĺkesson, J Nielsen
Current opinion in biotechnology 15 (1), 64-69, 2004
Unravelling the collateral damage of antibiotics on gut bacteria
L Maier, CV Goemans, J Wirbel, M Kuhn, C Eberl, M Pruteanu, P Müller, ...
Nature 599 (7883), 120-124, 2021
Bioaccumulation of therapeutic drugs by human gut bacteria
M Klünemann, S Andrejev, S Blasche, A Mateus, P Phapale, ...
Nature 597 (7877), 533-538, 2021
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community
S Blasche, Y Kim, RAT Mars, D Machado, M Maansson, E Kafkia, ...
Nature Microbiology, 1-13, 2021
Integration of metabolome data with metabolic networks reveals reporter reactions
T Cakir, KR Patil, ZI Önsan, KÖ Ülgen, B Kirdar, J Nielsen
Molecular systems biology 2 (1), 50, 2006
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