| Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ... Nucleic acids research 43 (3), e15-e15, 2015 | 2011 | 2015 |
| Rapid pneumococcal evolution in response to clinical interventions NJ Croucher, SR Harris, C Fraser, MA Quail, J Burton, M van der Linden, ... Science 331 (6016), 430-434, 2011 | 995 | 2011 |
| Evidence for several waves of global transmission in the seventh cholera pandemic A Mutreja, DW Kim, NR Thomson, TR Connor, JH Lee, S Kariuki, ... Nature 477 (7365), 462-465, 2011 | 796 | 2011 |
| Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak CU Köser, MTG Holden, MJ Ellington, EJP Cartwright, NM Brown, ... New England Journal of Medicine 366 (24), 2267-2275, 2012 | 787 | 2012 |
| Phandango: an interactive viewer for bacterial population genomics J Hadfield, NJ Croucher, RJ Goater, K Abudahab, DM Aanensen, ... Bioinformatics 34 (2), 292-293, 2017 | 531 | 2017 |
| Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species C Donati, NL Hiller, H Tettelin, A Muzzi, NJ Croucher, SV Angiuoli, ... Genome biology 11 (10), R107, 2010 | 433 | 2010 |
| Antibiotic treatment of Clostridium difficile carrier mice triggers a supershedder state, spore-mediated transmission, and severe disease in immunocompromised hosts TD Lawley, S Clare, AW Walker, D Goulding, RA Stabler, N Croucher, ... Infection and immunity 77 (9), 3661-3669, 2009 | 427 | 2009 |
| Dense genomic sampling identifies highways of pneumococcal recombination C Chewapreecha, SR Harris, NJ Croucher, C Turner, P Marttinen, ... Nature genetics 46 (3), 305, 2014 | 403 | 2014 |
| Population genomics of post-vaccine changes in pneumococcal epidemiology NJ Croucher, JA Finkelstein, SI Pelton, PK Mitchell, GM Lee, J Parkhill, ... Nature genetics 45 (6), 656, 2013 | 394 | 2013 |
| Studying bacterial transcriptomes using RNA-seq NJ Croucher, NR Thomson Current opinion in microbiology 13 (5), 619-624, 2010 | 373 | 2010 |
| Proteomic and genomic characterization of highly infectious Clostridium difficile 630 spores TD Lawley, NJ Croucher, L Yu, S Clare, M Sebaihia, D Goulding, ... Journal of bacteriology 191 (17), 5377-5386, 2009 | 299 | 2009 |
| Fast and flexible bacterial genomic epidemiology with PopPUNK JA Lees, SR Harris, G Tonkin-Hill, RA Gladstone, SW Lo, JN Weiser, ... Genome research 29 (2), 304-316, 2019 | 290 | 2019 |
| A strand-specific RNA–Seq analysis of the transcriptome of the typhoid bacillus salmonella typhi TT Perkins, RA Kingsley, MC Fookes, PP Gardner, KD James, L Yu, ... PLoS genetics 5 (7), e1000569, 2009 | 283 | 2009 |
| Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis KB Arnvig, I Comas, NR Thomson, J Houghton, HI Boshoff, NJ Croucher, ... PLoS Pathog 7 (11), e1002342, 2011 | 279 | 2011 |
| Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis MTG Holden, H Hauser, M Sanders, TH Ngo, I Cherevach, A Cronin, ... PLoS One 4 (7), e6072, 2009 | 275 | 2009 |
| Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes C Chewapreecha, P Marttinen, NJ Croucher, SJ Salter, SR Harris, ... PLoS Genet 10 (8), e1004547, 2014 | 231 | 2014 |
| Pneumococcal capsular switching: a historical perspective KL Wyres, LM Lambertsen, NJ Croucher, L McGee, A von Gottberg, ... Journal of Infectious Diseases 207 (3), 439-449, 2013 | 229 | 2013 |
| Detection of recombination events in bacterial genomes from large population samples P Marttinen, WP Hanage, NJ Croucher, TR Connor, SR Harris, ... Nucleic acids research 40 (1), e6-e6, 2011 | 221 | 2011 |
| Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes JA Lees, M Vehkala, N Välimäki, SR Harris, C Chewapreecha, ... Nature Communications 7, 12797, 2016 | 217 | 2016 |
| Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole … SW Lo, RA Gladstone, AJ Van Tonder, JA Lees, M Du Plessis, R Benisty, ... The Lancet Infectious Diseases 19 (7), 759-769, 2019 | 204 | 2019 |
Stephen BentleyWellcome Sanger InstituteVerified email at sanger.ac.uk
