Michael Bada
Michael Bada
Research Associate, University of Colorado Anschutz Medical Campus
Verified email at
Cited by
Cited by
Concept annotation in the CRAFT corpus
M Bada, M Eckert, D Evans, K Garcia, K Shipley, D Sitnikov, ...
BMC bioinformatics 13 (1), 1-20, 2012
A short study on the success of the Gene Ontology
M Bada, R Stevens, C Goble, Y Gil, M Ashburner, JA Blake, JM Cherry, ...
Journal of web semantics 1 (2), 235-240, 2004
Cross-product extensions of the Gene Ontology
CJ Mungall, M Bada, TZ Berardini, J Deegan, A Ireland, MA Harris, ...
Journal of biomedical informatics 44 (1), 80-86, 2011
RiboWeb: An ontology-based system for collaborative molecular biology
RB Altman, M Buda, XJ Chai, MW Carillo, RO Chen, NF Abernethy
IEEE Intelligent Systems and Their Applications 14 (5), 68-76, 1999
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools
KM Verspoor, KB Cohen, A Lanfranchi, C Warner, HL Johnson, C Roeder, ...
BMC bioinformatics, 2011
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters
C Funk, W Baumgartner, B Garcia, C Roeder, M Bada, KB Cohen, ...
BMC bioinformatics 15 (1), 1-29, 2014
KaBOB: ontology-based semantic integration of biomedical databases
KM Livingston, M Bada, WA Baumgartner, LE Hunter
BMC bioinformatics 16 (1), 1-21, 2015
Computational modeling of structural experimental data
MA Bada, RB Altman
Methods in enzymology 317, 470-484, 2000
Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology
DP Hill, N Adams, M Bada, C Batchelor, TZ Berardini, H Dietze, ...
BMC genomics 14 (1), 1-10, 2013
Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles
KB Cohen, A Lanfranchi, MJ Choi, M Bada, WA Baumgartner, ...
BMC bioinformatics 18 (1), 1-14, 2017
Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies
HL Johnson, KB Cohen, WA Baumgartner Jr, Z Lu, M Bada, T Kester, ...
Biocomputing 2006, 28-39, 2006
Enrichment of OBO ontologies
M Bada, L Hunter
Journal of Biomedical Informatics 40 (3), 300-315, 2007
Using reasoning to guide annotation with gene ontology terms in GOAT
M Bada, D Turi, R McEntire, R Stevens
ACM SIGMOD Record 33 (2), 27-32, 2004
Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein
M Bada, D Walther, B Arcangioli, S Doniach, M Delarue
Journal of molecular biology 300 (3), 563-574, 2000
The colorado richly annotated full text (craft) corpus: Multi-model annotation in the biomedical domain
KB Cohen, K Verspoor, K Fort, C Funk, M Bada, M Palmer, LE Hunter
Handbook of Linguistic Annotation, 1379-1394, 2017
Mining biochemical information: lessons taught by the ribosome
M Whirl-Carrillo, IS Gabashvili, M Bada, DR Banatao, RB Altman
Rna 8 (3), 279-289, 2002
Identification of OBO nonalignments and its implications for OBO enrichment
M Bada, L Hunter
Bioinformatics 24 (12), 1448-1455, 2008
An overview of the CRAFT concept annotation guidelines
M Bada, M Eckert, M Palmer, L Hunter
Proceedings of the Fourth Linguistic Annotation Workshop, 207-211, 2010
Ribosomal dynamics inferred from variations in experimental measurements
IS Gabashvili, M Whirl-Carrillo, M Bada, DR Banatao, RB Altman
Rna 9 (11), 1301-1307, 2003
Desiderata for ontologies to be used in semantic annotation of biomedical documents
M Bada, L Hunter
Journal of Biomedical Informatics 44 (1), 94-101, 2011
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