| Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases J Lloyd-Price, C Arze, AN Ananthakrishnan, M Schirmer, J Avila-Pacheco, ... Nature 569 (7758), 655-662, 2019 | 1895 | 2019 |
| Human gut microbes impact host serum metabolome and insulin sensitivity HK Pedersen, V Gudmundsdottir, HB Nielsen, T Hyotylainen, T Nielsen, ... Nature 535 (7612), 376-381, 2016 | 1767 | 2016 |
| Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014 | 1067 | 2014 |
| A defined commensal consortium elicits CD8 T cells and anti-cancer immunity T Tanoue, S Morita, DR Plichta, AN Skelly, W Suda, Y Sugiura, ... Nature 565 (7741), 600-605, 2019 | 873 | 2019 |
| Akkermansia muciniphila induces intestinal adaptive immune responses during homeostasis E Ansaldo, LC Slayden, KL Ching, MA Koch, NK Wolf, DR Plichta, ... Science 364 (6446), 1179-1184, 2019 | 378 | 2019 |
| Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut HM Roager, L Hansen, MI Bahl, HL Frandsen, V Carvalho, RJ Gøbel, ... Nature microbiology 1 (9), 1-9, 2016 | 343 | 2016 |
| Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians Y Sato, K Atarashi, DR Plichta, Y Arai, S Sasajima, SM Kearney, W Suda, ... Nature 599 (7885), 458-464, 2021 | 285 | 2021 |
| Host genetics and the rumen microbiome jointly associate with methane emissions in dairy cows GF Difford, DR Plichta, P Løvendahl, J Lassen, SJ Noel, O Højberg, ... PLoS genetics 14 (10), e1007580, 2018 | 234 | 2018 |
| Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life T Vatanen, DR Plichta, J Somani, PC Münch, TD Arthur, AB Hall, S Rudolf, ... Nature microbiology 4 (3), 470-479, 2019 | 192 | 2019 |
| Therapeutic opportunities in inflammatory bowel disease: mechanistic dissection of host-microbiome relationships DR Plichta, DB Graham, S Subramanian, RJ Xavier Cell 178 (5), 1041-1056, 2019 | 179 | 2019 |
| Cholesterol metabolism by uncultured human gut bacteria influences host cholesterol level DJ Kenny, DR Plichta, D Shungin, N Koppel, AB Hall, B Fu, RS Vasan, ... Cell host & microbe 28 (2), 245-257. e6, 2020 | 176 | 2020 |
| Multi-omics reveal microbial determinants impacting responses to biologic therapies in inflammatory bowel disease JWJ Lee, D Plichta, L Hogstrom, NZ Borren, H Lau, SM Gregory, W Tan, ... Cell host & microbe 29 (8), 1294-1304. e4, 2021 | 97 | 2021 |
| Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut X Jiang, AB Hall, TD Arthur, DR Plichta, CT Covington, M Poyet, ... Science 363 (6423), 181-187, 2019 | 93 | 2019 |
| Transcriptional interactions suggest niche segregation among microorganisms in the human gut DR Plichta, AS Juncker, M Bertalan, E Rettedal, L Gautier, E Varela, ... Nature Microbiology 1 (11), 1-6, 2016 | 55 | 2016 |
| Genome binning of viral entities from bulk metagenomics data J Johansen, DR Plichta, JN Nissen, ML Jespersen, SA Shah, L Deng, ... Nature communications 13 (1), 965, 2022 | 52 | 2022 |
| Impact of the rumen microbiome on milk fatty acid composition of Holstein cattle B Buitenhuis, J Lassen, SJ Noel, DR Plichta, P Sørensen, GF Difford, ... Genetics Selection Evolution 51, 1-8, 2019 | 47 | 2019 |
| Discovery of bioactive microbial gene products in inflammatory bowel disease Y Zhang, A Bhosle, S Bae, LJ McIver, G Pishchany, EK Accorsi, ... Nature 606 (7915), 754-760, 2022 | 44 | 2022 |
| Contamination of the Arctic reflected in microbial metagenomes from the Greenland ice sheet AL Hauptmann, T Sicheritz-Pontén, KA Cameron, J Bælum, DR Plichta, ... Environmental Research Letters 12 (7), 074019, 2017 | 44 | 2017 |
| Alterations in fecal microbiomes and serum metabolomes of fatigued patients with quiescent inflammatory bowel diseases NZ Borren, D Plichta, AD Joshi, G Bonilla, V Peng, FP Colizzo, J Luther, ... Clinical Gastroenterology and Hepatology 19 (3), 519-527. e5, 2021 | 43 | 2021 |
| Mobile genetic elements from the maternal microbiome shape infant gut microbial assembly and metabolism T Vatanen, KS Jabbar, T Ruohtula, J Honkanen, J Avila-Pacheco, ... Cell 185 (26), 4921-4936. e15, 2022 | 41 | 2022 |
