Giuseppe Narzisi

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Bud MishraProfessor of Computer Science and MathematicsVerified email at nyu.edu
Giuseppe NicosiaUniversity of Catania, ItalyVerified email at unict.it
vincenzo cutelloProfessor of Computer Science, University of Catania, ItalyVerified email at unict.it
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at cs.jhu.edu
Gholson LyonInstitute for Basic Research in Developmental DisabilitiesVerified email at opwdd.ny.gov
Mario PavoneAssociate Professor in Computer Science, University of CataniaVerified email at dmi.unict.it
Han FangGenAI, MetaVerified email at fb.com
Nicolas RobineDirector, Computational Biology. New York Genome CenterVerified email at nygenome.org
Michael Wiglercold spring harbor laboratoryVerified email at cshl.edu
Zihua Wangsenior research investigator, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Kanika AroraPrincipal Computational Biologist, MSKCCVerified email at mskcc.org
Rajeeva Lochan MusunuriNew York Genome CenterVerified email at nygenome.org
Michael RonemusResearch Assistant Professor, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Egor DolzhenkoPacific BiosciencesVerified email at pacificbiosciences.com
Ewa A Bergmann (Grabowska)Manager, Bioinformatics at IlluminaVerified email at illumina.com
Vladimir Vacic23andMe, Inc.Verified email at 23andme.com
Laura T Jiménez-BarrónCold Spring Harbor Laboratory, National Autonomous University of Mexico, Max Planck Institute ofVerified email at cshl.edu
Minita ShahMerckVerified email at merck.com
Andrew M. GrossInvitaeVerified email at invitae.com
Michael A EberlePacific BiosciencesVerified email at pacificbiosciences.com

Giuseppe Narzisi

Lead Bioinformatics Scientist, New York Genome Center

Verified email at nygenome.org - Homepage

Genomics Next Generation Sequencing Variant Calling Sequence Assembly Computer Science


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The contribution of de novo coding mutations to autism spectrum disorder I Iossifov, BJ O’roak, SJ Sanders, M Ronemus, N Krumm, D Levy, ... Nature 515 (7526), 216-221, 2014	2433	2014
De novo gene disruptions in children on the autistic spectrum I Iossifov, M Ronemus, D Levy, Z Wang, I Hakker, J Rosenbaum, ... Neuron 74 (2), 285-299, 2012	1598	2012
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) R Ming, R VanBuren, Y Liu, M Yang, Y Han, LT Li, Q Zhang, MJ Kim, ... Genome biology 14 (5), 1-11, 2013	364	2013
High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios M Byrska-Bishop, US Evani, X Zhao, AO Basile, HJ Abel, AA Regier, ... Cell 185 (18), 3426-3440. e19, 2022	332	2022
Detection of long repeat expansions from PCR-free whole-genome sequence data E Dolzhenko, JJFA van Vugt, RJ Shaw, MA Bekritsky, M van Blitterswijk, ... Genome research 27 (11), 1895-1903, 2017	289	2017
Accurate de novo and transmitted indel detection in exome-capture data using microassembly G Narzisi, JA O'rawe, I Iossifov, H Fang, Y Lee, Z Wang, Y Wu, GJ Lyon, ... Nature methods 11 (10), 1033-1036, 2014	231	2014
Comparing de novo genome assembly: the long and short of it G Narzisi, B Mishra PloS one 6 (4), e19175, 2011	198	2011
Reducing INDEL calling errors in whole genome and exome sequencing data H Fang, Y Wu, G Narzisi, JA ORawe, LTJ Barrón, J Rosenbaum, ... Genome medicine 6, 1-17, 2014	192	2014
ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ... Bioinformatics 35 (22), 4754-4756, 2019	168	2019
A multi-objective evolutionary approach to the protein structure prediction problem V Cutello, G Narzisi, G Nicosia Journal of The Royal Society Interface 3 (6), 139-151, 2006	161	2006
Clonal selection algorithms: A comparative case study using effective mutation potentials V Cutello, G Narzisi, G Nicosia, M Pavone Artificial Immune Systems: 4th International Conference, ICARIS 2005, Banff …, 2005	160	2005
Reevaluating assembly evaluations with feature response curves: GAGE and assemblathons F Vezzi, G Narzisi, B Mishra PloS one 7 (12), e52210, 2012	123	2012
ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data E Dolzhenko, MF Bennett, PA Richmond, B Trost, S Chen, JJFA van Vugt, ... Genome biology 21, 1-14, 2020	106	2020
Indel variant analysis of short-read sequencing data with Scalpel H Fang, EA Bergmann, K Arora, V Vacic, MC Zody, I Iossifov, JA O'rawe, ... Nature protocols 11 (12), 2529-2548, 2016	106	2016
Method, computer-accessible medium and systems for score-driven whole-genome shotgun sequence assemble B Mishra, G Narzisi US Patent 10,839,940, 2020	104*	2020
Genome-wide somatic variant calling using localized colored de Bruijn graphs G Narzisi, A Corvelo, K Arora, EA Bergmann, M Shah, R Musunuri, ... Communications biology 1 (1), 20, 2018	96	2018
Curated variation benchmarks for challenging medically relevant autosomal genes J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ... Nature biotechnology 40 (5), 672-680, 2022	91	2022
Benchmarking challenging small variants with linked and long reads J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ... Cell Genomics 2 (5), 2022	87	2022
Feature-by-feature–evaluating de novo sequence assembly F Vezzi, G Narzisi, B Mishra PloS one 7 (2), e31002, 2012	83	2012
Multi-objective evolutionary optimization of agent-based models: An application to emergency response planning. G Narzisi, V Mysore, B Mishra Computational Intelligence 2006, 224-230, 2006	77	2006

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