Andrey Alexeyenko
Andrey Alexeyenko
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The Norway spruce genome sequence and conifer genome evolution
B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin, DG Scofield, ...
Nature 497 (7451), 579-584, 2013
High-throughput in vivo analysis of gene expression in Caenorhabditis elegans
R Hunt-Newbury, R Viveiros, R Johnsen, A Mah, D Anastas, L Fang, ...
PLoS biology 5 (9), e237, 2007
Automatic clustering of orthologs and inparalogs shared by multiple proteomes
A Alexeyenko, I Tamas, G Liu, ELL Sonnhammer
Bioinformatics 22 (14), e9-e15, 2006
Global networks of functional coupling in eukaryotes from comprehensive data integration
A Alexeyenko, ELL Sonnhammer
Genome research 19 (6), 1107-1116, 2009
Spatially resolved transcriptome profiling in model plant species
S Giacomello, F Salmén, BK Terebieniec, S Vickovic, JF Navarro, ...
Nature plants 3 (6), 1-11, 2017
Network enrichment analysis: extension of gene-set enrichment analysis to gene networks
A Alexeyenko, W Lee, M Pernemalm, J Guegan, P Dessen, V Lazar, ...
BMC bioinformatics 13, 1-11, 2012
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
CA Brownstein, AH Beggs, N Homer, B Merriman, TW Yu, KC Flannery, ...
Genome biology 15, 1-18, 2014
Inhibition of tumor cell proliferation and motility by fibroblasts is both contact and soluble factor dependent
T Alkasalias, E Flaberg, V Kashuba, A Alexeyenko, T Pavlova, ...
Proceedings of the National Academy of Sciences 111 (48), 17188-17193, 2014
Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis
SK Merid, D Goranskaya, A Alexeyenko
BMC bioinformatics 15, 1-21, 2014
Expression of scavenger receptor MARCO defines a targetable tumor‐associated macrophage subset in non‐small cell lung cancer
L La Fleur, VF Boura, A Alexeyenko, A Berglund, V Pontén, JSM Mattsson, ...
International Journal of Cancer 143 (7), 1741-1752, 2018
Comparative interactomics with Funcoup 2.0
A Alexeyenko, T Schmitt, A Tjärnberg, D Guala, O Frings, ...
Nucleic acids research 40 (D1), D821-D828, 2012
Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk
CA Reynolds, MG Hong, UK Eriksson, K Blennow, F Wiklund, ...
Human molecular genetics 19 (10), 2068-2078, 2010
Identification of novel epigenetic markers of prostate cancer by NotI-microarray analysis
AA Dmitriev, EE Rosenberg, GS Krasnov, GV Gerashchenko, ...
Disease markers 2015, 2015
Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity
A Alexeyenko, DM Wassenberg, EK Lobenhofer, J Yen, E Linney, ...
PloS one 5 (5), e10465, 2010
Genome-wide pathway analysis implicates intracellular transmembrane protein transport in Alzheimer disease
MG Hong, A Alexeyenko, JC Lambert, P Amouyel, JA Prince
Journal of human genetics 55 (10), 707-709, 2010
Statistical assessment of crosstalk enrichment between gene groups in biological networks
T McCormack, O Frings, A Alexeyenko, ELL Sonnhammer
PloS one 8 (1), e54945, 2013
Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines
P Akan, A Alexeyenko, PI Costea, L Hedberg, BW Solnestam, S Lundin, ...
Genome medicine 4, 1-13, 2012
Novel genes and pathways modulated by syndecan-1: implications for the proliferation and cell-cycle regulation of malignant mesothelioma cells
T Szatmári, F Mundt, G Heidari-Hamedani, F Zong, E Ferolla, ...
PloS one 7 (10), e48091, 2012
Overview and comparison of ortholog databases
A Alexeyenko, J Lindberg, Ĺ Pérez-Bercoff, ELL Sonnhammer
Drug Discovery Today: Technologies 3 (2), 137-143, 2006
RhoA knockout fibroblasts lose tumor-inhibitory capacity in vitro and promote tumor growth in vivo
T Alkasalias, A Alexeyenko, K Hennig, F Danielsson, RJ Lebbink, ...
Proceedings of the National Academy of Sciences 114 (8), E1413-E1421, 2017
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