| PureCLIP: capturing target-specific protein–RNA interaction footprints from single-nucleotide CLIP-seq data S Krakau, H Richard, A Marsico Genome biology 18, 1-17, 2017 | 147 | 2017 |
| Integration of multiomics data with graph convolutional networks to identify new cancer genes and their associated molecular mechanisms R Schulte-Sasse, S Budach, D Hnisz, A Marsico Nature Machine Intelligence 3 (6), 513-526, 2021 | 146 | 2021 |
| PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs A Marsico, MR Huska, J Lasserre, H Hu, D Vucicevic, A Musahl, UA Orom, ... Genome biology 14, 1-23, 2013 | 141 | 2013 |
| Microprocessor activity controls differential miRNA biogenesis in vivo T Conrad, A Marsico, M Gehre, UA Ørom Cell reports 9 (2), 542-554, 2014 | 101 | 2014 |
| Pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks S Budach, A Marsico Bioinformatics 34 (17), 3035-3037, 2018 | 95 | 2018 |
| Effect of atmospheric aging on soot particle toxicity in lung cell models at the air–liquid interface: differential toxicological impacts of biogenic and anthropogenic … S Offer, E Hartner, S Di Bucchianico, C Bisig, S Bauer, J Pantzke, ... Environmental health perspectives 130 (2), 027003, 2022 | 76 | 2022 |
| The function of Wtap in N6-adenosine methylation of mRNAs controls T cell receptor signaling and survival of T cells T Ito-Kureha, C Leoni, K Borland, G Cantini, M Bataclan, RN Metzger, ... Nature Immunology 23 (8), 1208-1221, 2022 | 54 | 2022 |
| TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs A Bressin, R Schulte-Sasse, D Figini, EC Urdaneta, BM Beckmann, ... Nucleic acids research 47 (9), 4406-4417, 2019 | 54 | 2019 |
| Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features LBA e Sousa, I Jonkers, L Syx, I Dunkel, J Chaumeil, C Picard, B Foret, ... Genome research 29 (7), 1087-1099, 2019 | 53 | 2019 |
| A long non-coding RNA links calreticulin-mediated immunogenic cell removal to RB1 transcription AS Musahl, X Huang, S Rusakiewicz, E Ntini, A Marsico, G Kroemer, ... Oncogene 34 (39), 5046-5054, 2015 | 51 | 2015 |
| A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy A Marsico, D Labudde, T Sapra, DJ Muller, M Schroeder Bioinformatics 23 (2), e231-e236, 2007 | 47 | 2007 |
| Distal and proximal cis-regulatory elements sense X chromosome dosage and developmental state at the Xist locus RAF Gjaltema, T Schwämmle, P Kautz, M Robson, R Schöpflin, LR Lustig, ... Molecular Cell 82 (1), 190-208. e17, 2022 | 45 | 2022 |
| Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin E Ntini, A Louloupi, J Liz, JM Muino, A Marsico, UAV Ørom Nature communications 9 (1), 1636, 2018 | 44 | 2018 |
| ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data D Heller, R Krestel, U Ohler, M Vingron, A Marsico Nucleic acids research 45 (19), 11004-11018, 2017 | 41 | 2017 |
| Graph convolutional networks improve the prediction of cancer driver genes R Schulte-Sasse, S Budach, D Hnisz, A Marsico Artificial Neural Networks and Machine Learning–ICANN 2019: Workshop and …, 2019 | 36 | 2019 |
| Integrated analysis of Xist upregulation and X-chromosome inactivation with single-cell and single-allele resolution G Pacini, I Dunkel, N Mages, V Mutzel, B Timmermann, A Marsico, ... Nature Communications 12 (1), 3638, 2021 | 35 | 2021 |
| Single-cell RNA sequencing uncovers the nuclear decoy lincRNA PIRAT as a regulator of systemic monocyte immunity during COVID-19 M Aznaourova, N Schmerer, H Janga, Z Zhang, K Pauck, J Bushe, ... Proceedings of the National Academy of Sciences 119 (36), e2120680119, 2022 | 31 | 2022 |
| Identification of 170 New Long Noncoding RNAs in Schistosoma mansoni VF Oliveira, LAG Moares, EA Mota, LK Jannotti-Passos, PMZ Coelho, ... BioMed research international 2018 (1), 1264697, 2018 | 29 | 2018 |
| Exposure to naphthalene and β-pinene-derived secondary organic aerosol induced divergent changes in transcript levels of BEAS-2B cells M Pardo, S Offer, E Hartner, S Di Bucchianico, C Bisig, S Bauer, J Pantzke, ... Environment international 166, 107366, 2022 | 27 | 2022 |
| MeMotif: a database of linear motifs in α-helical transmembrane proteins A Marsico, K Scheubert, A Tuukkanen, A Henschel, C Winter, ... Nucleic acids research 38 (suppl_1), D181-D189, 2010 | 24 | 2010 |
