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Tomasz Adamusiak MD PhD
Tomasz Adamusiak MD PhD
Chief Scientist, Clinical Insights and Innovation Cell
Verified email at mitre.org - Homepage
Title
Cited by
Cited by
Year
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression
H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ...
Nucleic acids research 37 (suppl_1), D868-D872, 2009
4992009
Modeling sample variables with an Experimental Factor Ontology
J Malone, E Holloway, T Adamusiak, M Kapushesky, J Zheng, ...
Bioinformatics 26 (8), 1112-1118, 2010
4672010
ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments
H Parkinson, U Sarkans, N Kolesnikov, N Abeygunawardena, T Burdett, ...
Nucleic acids research 39 (suppl_1), D1002-D1004, 2010
3732010
Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments
M Kapushesky, T Adamusiak, T Burdett, A Culhane, A Farne, A Filippov, ...
Nucleic acids research 40 (D1), D1077-D1081, 2012
1822012
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button
M Swertz, M Dijkstra, T Adamusiak, J van der Velde, A Kanterakis, E Roos, ...
BMC bioinformatics 11 (Suppl 12), S12, 2010
1132010
OntoCAT-simple ontology search and integration in Java, R and REST/JavaScript
T Adamusiak, T Burdett, N Kurbatova, KJ van der Velde, ...
BMC bioinformatics 12 (1), 218, 2011
59*2011
Observ‐OM and Observ‐TAB: Universal syntax solutions for the integration, search, and exchange of phenotype and genotype information
T Adamusiak, H Parkinson, J Muilu, E Roos, KJ van der Velde, ...
Human mutation 33 (5), 867-873, 2012
262012
Next generation phenotyping using the unified medical language system
T Adamusiak, N Shimoyama, M Shimoyama
JMIR medical informatics 2 (1), e3172, 2014
232014
Translating standards into practice: one semantic web API for gene expression
HF Deus, J Zhao, JP McCusker, R Fox, E Prud'hommeaux, J Malone, ...
Proceedings of the 4th International Workshop on Semantic Web Applications …, 2011
232011
VarioML framework for comprehensive variation data representation and exchange
M Byrne, IFAC Fokkema, O Lancaster, T Adamusiak, A Ahonen-Bishopp, ...
BMC bioinformatics 13 (1), 1-10, 2012
192012
ontoCAT: an R package for ontology traversal and search
N Kurbatova, T Adamusiak, P Kurnosov, MA Swertz, M Kapushesky
Bioinformatics 27 (17), 2468-2470, 2011
192011
Quality assurance in LOINC using Description Logic
T Adamusiak, O Bodenreider
AMIA Annual Symposium Proceedings 2012, 1099, 2012
142012
Anatomy ontologies and potential users: bridging the gap
RS Travillian, T Adamusiak, T Burdett, M Gruenberger, J Hancock, ...
Journal of Biomedical Semantics 2 (4), 1-10, 2011
122011
EHR-based phenome wide association study in pancreatic cancer
T Adamusiak, M Shimoyama
AMIA Summits on Translational Science Proceedings 2014, 9, 2014
72014
Rapid Development of an Ontology of Coriell Cell Lines.
C Pang, T Adamusiak, HE Parkinson, J Malone
ICBO, 2011
12011
The Coriell Cell Line Ontology: Rapidly Developing Large Ontologies
C Pang, T Adamusiak, H Parkinson, J Malone
Bio-Ontologies 2011, 2011
12011
Package ‘ontoCAT’
N Kurbatova, T Adamusiak, P Kurnosov, M Swertz, M Kapushevsky, ...
2015
Ontologies Put More Meaning into Meaningful Use.
T Adamusiak, N Shimoyama, A Fuiks, M Shimoyama
SWAT4LS, 2012
2012
VarioML framework for comprehensive variation data representation and exchange
J Muilu, AJ Brookes, M Vihinen, GA Thorisson, PEM Taschner, MA Swertz, ...
2012
ClinMynEHR: ontology based clinical data portal
M Shimoyama, T Adamusiak, J DePons, W Liu
F1000Research 3, 2012
2012
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Articles 1–20