Jurgen Nijkamp
Jurgen Nijkamp
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De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN. PK113-7D, a model for modern industrial biotechnology
JF Nijkamp, M van den Broek, E Datema, S de Kok, L Bosman, MA Luttik, ...
Microbial cell factories 11 (1), 1-17, 2012
Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae
B Oud, V Guadalupe-Medina, JF Nijkamp, D de Ridder, JT Pronk, ...
Proceedings of the National Academy of Sciences 110 (45), E4223-E4231, 2013
De novo detection of copy number variation by co-assembly
JF Nijkamp, MA van den Broek, JMA Geertman, MJT Reinders, ...
Bioinformatics 28 (24), 3195-3202, 2012
Chromosomal copy number variation in Saccharomyces pastorianus is evidence for extensive genome dynamics in industrial lager brewing strains
M Van den Broek, I Bolat, JF Nijkamp, E Ramos, MAH Luttik, F Koopman, ...
Applied and environmental microbiology 81 (18), 6253-6267, 2015
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies
AA Gritsenko, JF Nijkamp, MJT Reinders, D Ridder
Bioinformatics 28 (11), 1429-1437, 2012
Laboratory evolution of new lactate transporter genes in a jen1Δ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole‐genome resequencing andá…
S Kok, JF Nijkamp, B Oud, FC Roque, D Ridder, JM Daran, JT Pronk, ...
FEMS Yeast Research, 2012
Integrating genome assemblies with MAIA
J Nijkamp, W Winterbach, M Van den Broek, JM Daran, M Reinders, ...
Bioinformatics 26 (18), i433-i439, 2010
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold
JF Nijkamp, M Pop, MJT Reinders, D de Ridder
Bioinformatics 29 (22), 2826-2834, 2013
Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger
BA Berg, JF Nijkamp, MJT Reinders, L Wu, HJ Pel, JA Roubos, D Ridder
IAPR International Conference on Pattern Recognition in Bioinformatics, 3-14, 2010
Powdery mildew resistance genes in carrot
AD Haarsma, WA Zwaan, JF Nijkamp, JP Martinus, PA Dekker, ...
US Patent 10,704,058, 2020
Algorithms for sequence-based reverse metabolic engineering
JF Nijkamp
Delft University of Technology, 2013
Laboratory evolution of new lactate transporter genes in a jen1┐ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing andá…
MA van den Broek, S de Kok, JF Nijkamp, B Oud, F Roque, D de Ridder, ...
5th Conference on Physiology of Yeast and Filamentous Fungi, 2013
A classifier approach to predict protein secretion in Aspergillus niger
B van den Berg, J Nijkamp, M Reinders, H Pel, L Wu, J Roubos
ISMB 2010, 2010
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