Ram Samudrala
Ram Samudrala
Professor and Chief, Division of Bioinformatics, University at Buffalo
Verified email at - Homepage
Cited by
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The Genomes of Oryza sativa: A History of Duplications
J Yu, J Wang, W Lin, S Li, H Li, J Zhou, P Ni, W Dong, S Hu, C Zeng, ...
PLoS biology 3 (2), e38, 2005
Pseudomonas aeruginosa uses a cyclic‐di‐GMP‐regulated adhesin to reinforce the biofilm extracellular matrix
BR Borlee, AD Goldman, K Murakami, R Samudrala, DJ Wozniak, ...
Molecular microbiology 75 (4), 827-842, 2010
Data access for the 1,000 Plants (1KP) project
N Matasci, LH Hung, Z Yan, EJ Carpenter, NJ Wickett, S Mirarab, ...
Gigascience 3 (1), 2047-217X-3-17, 2014
An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction
R Samudrala, J Moult
Journal of molecular biology 275 (5), 895-916, 1998
Decoys ‘R’Us: a database of incorrect conformations to improve protein structure prediction
R Samudrala, M Levitt
Protein science 9 (7), 1399-1401, 2000
Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems
R Samudrala, F Heffron, JE McDermott
PLoS pathogens 5 (4), e1000375, 2009
Ab initio construction of protein tertiary structures using a hierarchical approach
Y Xia, ES Huang, M Levitt, R Samudrala
Journal of molecular biology 300 (1), 171-185, 2000
A graph-theoretic algorithm for comparative modeling of protein structure
R Samudrala, J Moult
Journal of molecular biology 279 (1), 287-302, 1998
A novel knowledge-based approach to design inorganic-binding peptides
EE Oren, C Tamerler, D Sahin, M Hnilova, UOS Seker, M Sarikaya, ...
Bioinformatics 23 (21), 2816-2822, 2007
Neutral evolution of ‘non-coding’complementary DNAs
J Wang, J Zhang, H Zheng, J Li, D Liu, H Li, R Samudrala, J Yu, ...
Nature 431 (7010), 1-2, 2004
Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobacter
C Jenkins, R Samudrala, I Anderson, BP Hedlund, G Petroni, ...
Proceedings of the National Academy of Sciences 99 (26), 17049-17054, 2002
Novel paradigms for drug discovery: computational multitarget screening
E Jenwitheesuk, JA Horst, KL Rivas, WC Van Voorhis, R Samudrala
Trends in pharmacological sciences 29 (2), 62-71, 2008
Caries induced cytokine network in the odontoblast layer of human teeth
OV Horst, JA Horst, R Samudrala, BA Dale
BMC immunology 12, 1-13, 2011
Ab initio protein structure prediction using a combined hierarchical approach
R Samudrala, Y Xia, E Huang, M Levitt
Proteins: Structure, Function, and Bioinformatics 37 (S3), 194-198, 1999
Computational prediction of type III and IV secreted effectors in gram-negative bacteria
JE McDermott, A Corrigan, E Peterson, C Oehmen, G Niemann, ...
Infection and immunity 79 (1), 23-32, 2011
Structural polymorphism and diversifying selection on the pregnancy malaria vaccine candidate VAR2CSA
J Bockhorst, F Lu, JH Janes, J Keebler, B Gamain, P Awadalla, X Su, ...
Molecular and biochemical parasitology 155 (2), 103-112, 2007
Structural optimization and de novo design of dengue virus entry inhibitory peptides
JM Costin, E Jenwitheesuk, SM Lok, E Hunsperger, KA Conrads, ...
PLoS neglected tropical diseases 4 (6), e721, 2010
Ab initio fold prediction of small helical proteins using distance geometry and knowledge-based scoring functions
ES Huang, R Samudrala, JW Ponder
Journal of molecular biology 290 (1), 267-281, 1999
Incorporating background frequency improves entropy-based residue conservation measures
K Wang, R Samudrala
BMC bioinformatics 7, 1-8, 2006
Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design
G Cheng, B Qian, R Samudrala, D Baker
Nucleic Acids Research 33 (18), 5861-5867, 2005
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