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The global phosphorylation landscape of SARS-CoV-2 infection M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, MC Marrero, ... Cell 182 (3), 685-712. e19, 2020 | 875 | 2020 |
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms DE Gordon, J Hiatt, M Bouhaddou, VV Rezelj, S Ulferts, H Braberg, ... Science 370 (6521), eabe9403, 2020 | 616 | 2020 |
A structural biology community assessment of AlphaFold2 applications M Akdel, DEV Pires, EP Pardo, J Jänes, AO Zalevsky, B Mészáros, ... Nature Structural & Molecular Biology 29 (11), 1056-1067, 2022 | 363 | 2022 |
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Population structure, stratification, and introgression of human structural variation MA Almarri, A Bergström, J Prado-Martinez, F Yang, B Fu, AS Dunham, ... Cell 182 (1), 189-199. e15, 2020 | 74 | 2020 |
The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae M Galardini, BP Busby, C Vieitez, AS Dunham, A Typas, P Beltrao Molecular Systems Biology 15 (12), e8831, 2019 | 57 | 2019 |
Exploring amino acid functions in a deep mutational landscape AS Dunham, P Beltrao Molecular systems biology 17 (7), e10305, 2021 | 41 | 2021 |
SARS-CoV-2 variants evolve convergent strategies to remodel the host response M Bouhaddou, AK Reuschl, BJ Polacco, LG Thorne, MR Ummadi, C Ye, ... Cell 186 (21), 4597-4614. e26, 2023 | 24 | 2023 |
Inferring fitness effects from time-resolved sequence data with a delay-deterministic model NR Nené, AS Dunham, CJR Illingworth Genetics 209 (1), 255-264, 2018 | 12 | 2018 |
High-throughput deep learning variant effect prediction with Sequence UNET AS Dunham, P Beltrao, M AlQuraishi Genome Biology 24 (1), 110, 2023 | 11 | 2023 |
A missense variant effect prediction and annotation resource for SARS-CoV-2 A Dunham, GM Jang, M Muralidharan, D Swaney, P Beltrao bioRxiv, 2021.02. 24.432721, 2021 | 10 | 2021 |
Global landscape of the host response to SARS-CoV-2 variants reveals viral evolutionary trajectories M Bouhaddou, AK Reuschl, BJ Polacco, LG Thorne, MR Ummadi, C Ye, ... bioRxiv, 2022.10. 19.512927, 2022 | 8 | 2022 |
SARS-CoV-2 Variants Evolve Convergent Strategies to Remodel the Host Response (preprint) M Bouhaddou, AK Reuschl, BJ Polacco, LG Thorne, MR Ummadi, C Ye, ... | | 2023 |
Modelling the structural, functional and phenotypic consequences of protein coding mutations A Dunham | | 2022 |
Global landscape of the host response to SARS-CoV-2 variants reveals viral evolutionary trajectories (preprint) M Bouhaddou, AK Reuschl, BJ Polacco, LG Thorne, MR Ummadi, C Ye, ... | | 2022 |
Towards a structurally resolved human protein interaction network A Elofsson, D Burke, P Bryant, I Barrio-Hernandez, D Memon, G Pozzati, ... | | 2021 |
A missense variant effect prediction and annotation resource for SARS-CoV-2 (preprint) A Dunham, GM Jang, M Muralidharan, D Swaney, P Beltrao | | 2021 |
High-throughput deep learning variant effect prediction witháSequence UNET AS Dunham, P Beltrao, M AlQuraishi | | |