Follow
Chen Chen
Title
Cited by
Cited by
Year
A transcriptomic analysis of superhybrid rice LYP9 and its parents
G Wei, Y Tao, G Liu, C Chen, R Luo, H Xia, Q Gan, H Zeng, Z Lu, Y Han, ...
Proceedings of the National Academy of Sciences 106 (19), 7695-7701, 2009
2232009
Bioinformatics methods for mass spectrometry-based proteomics data analysis
C Chen, J Hou, JJ Tanner, J Cheng
International journal of molecular sciences 21 (8), 2873, 2020
1982020
Multiomics profiling establishes the polypharmacology of FDA-approved CDK4/6 inhibitors and the potential for differential clinical activity
M Hafner, CE Mills, K Subramanian, C Chen, M Chung, SA Boswell, ...
Cell chemical biology 26 (8), 1067-1080. e8, 2019
1712019
Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa
J Hou, X Shi, C Chen, MS Islam, AF Johnson, T Kanno, B Huettel, MR Yen, ...
Proceedings of the National Academy of Sciences 115 (48), E11321-E11330, 2018
582018
DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks
C Chen, J Hou, X Shi, H Yang, JA Birchler, J Cheng
BMC bioinformatics 22, 1-18, 2021
532021
Identification of AT lineage antigen in the catfish
BJ Passer, CIH Chen, NW Miller, MD Cooper
Developmental & Comparative Immunology 20 (6), 441-450, 1996
491996
Development of cytoplasmic CD3+/T cell receptor‐negative cells in the peripheral lymphoid tissues of chickens
R Pat Bucy, CIH Chen, MD Cooper
European journal of immunology 20 (6), 1345-1350, 1990
481990
Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution
N Blavet, H Yang, H Su, P Solanský, RN Douglas, M Karafiátová, ...
Proceedings of the National Academy of Sciences 118 (23), e2104254118, 2021
352021
Trb3 controls mesenchymal stem cell lineage fate and enhances bone regeneration by scaffold-mediated local gene delivery
J Fan, CS Lee, S Kim, X Zhang, J Pi-Anfruns, M Guo, C Chen, ...
Biomaterials 264, 120445, 2021
342021
Combination of deep neural network with attention mechanism enhances the explainability of protein contact prediction
C Chen, T Wu, Z Guo, J Cheng
Proteins: Structure, Function, and Bioinformatics 89 (6), 697-707, 2021
322021
Geometric transformers for protein interface contact prediction
A Morehead, C Chen, J Cheng
arXiv preprint arXiv:2110.02423, 2021
282021
Berberine reverses abnormal expression of L-type pyruvate kinase by DNA demethylation and histone acetylation in the livers of the non-alcoholic fatty disease rat
Y Zhang, X Chang, X Song, C Chen, H Chen, Z Lu, X Gao, D Lu
International journal of clinical and experimental medicine 8 (5), 7535, 2015
282015
Genomic imbalance determines positive and negative modulation of gene expression in diploid maize
X Shi, H Yang, C Chen, J Hou, KM Hanson, PS Albert, T Ji, J Cheng, ...
The Plant Cell 33 (4), 917-939, 2021
242021
Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize
H Yang, X Shi, C Chen, J Hou, T Ji, J Cheng, JA Birchler
The Plant Cell 33 (4), 901-916, 2021
222021
Systems-wide analysis revealed shared and unique responses to moderate and acute high temperatures in the green alga Chlamydomonas reinhardtii
N Zhang, EM Mattoon, W McHargue, B Venn, D Zimmer, K Pecani, ...
Communications biology 5 (1), 460, 2022
212022
3D-equivariant graph neural networks for protein model quality assessment
C Chen, X Chen, A Morehead, T Wu, J Cheng
Bioinformatics 39 (1), btad030, 2023
192023
Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance
AF Johnson, J Hou, H Yang, X Shi, C Chen, MS Islam, T Ji, J Cheng, ...
Journal of genetics and genomics 47 (2), 93-103, 2020
182020
Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15
J Liu, Z Guo, T Wu, RS Roy, F Quadir, C Chen, J Cheng
Communications Biology 6 (1), 1140, 2023
162023
Dips-plus: The enhanced database of interacting protein structures for interface prediction
A Morehead, C Chen, A Sedova, J Cheng
Scientific Data 10 (1), 509, 2023
142023
Quantitative proteomics reveals docosahexaenoic acid-mediated neuroprotective effects in lipopolysaccharide-stimulated microglial cells
B Yang, R Li, PN Liu, X Geng, BP Mooney, C Chen, J Cheng, KL Fritsche, ...
Journal of proteome research 19 (6), 2236-2246, 2020
142020
The system can't perform the operation now. Try again later.
Articles 1–20